miRNA display CGI


Results 161 - 180 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 118683 0.75 0.996959
Target:  5'- -aUAUAUAGUUaGGG-GUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAaUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 184780 0.75 0.996385
Target:  5'- -aUAUAUAGCcUAGGUGUUGAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGaAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 136001 0.94 0.38378
Target:  5'- ----cAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccauaUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 145073 0.93 0.411501
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 140962 0.92 0.44043
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 43887 0.91 0.491083
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGaGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 100701 0.9 0.533466
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 124421 0.9 0.533466
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 173499 0.71 0.999857
Target:  5'- uGUAUAUAaUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 16531 0.75 0.995725
Target:  5'- -aUAUAUAGCUcAGGUGUUAAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGAaUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 165757 0.75 0.996385
Target:  5'- aGUAUAUGuuaaCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUc---GAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 39612 0.86 0.752626
Target:  5'- aGUGaauUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAU---AUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 72257 0.87 0.709904
Target:  5'- -aUAUAUAGCUUAGuUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 178441 0.87 0.676999
Target:  5'- aGUAUAUAaUUUAGGUGUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 162576 0.87 0.665929
Target:  5'- aGUAUAUAGaUUAGGUGUUAAAGGGc -3'
miRNA:   3'- cCAUAUAUCgAAUCCACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 169167 0.88 0.621431
Target:  5'- --gAUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 43022 0.91 0.512093
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 146944 0.89 0.57708
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 105307 0.89 0.57708
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 143803 0.9 0.555148
Target:  5'- uGUAUAUAGCUUAGGUGUUAAGaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.