miRNA display CGI


Results 61 - 80 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 81950 0.68 0.999998
Target:  5'- aGUAUAUAGCUUAag---UAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUccacaAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 36842 0.69 0.999997
Target:  5'- aGUAUAUAGCUUAGGUaUUAAAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 124519 0.71 0.999857
Target:  5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUcCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 145373 0.72 0.999814
Target:  5'- -aUAUAUAGCUUAaacGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUccaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 63275 0.72 0.999814
Target:  5'- --cAUAUAGCUUAaagGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAUCGAAUccaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 49629 0.72 0.999814
Target:  5'- -uUAUAUaAGcCUUAGGgGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUA-UC-GAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 22594 0.72 0.999814
Target:  5'- -uUAUAUAGcCUUAGGauUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUC-GAAUCCacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 90279 0.72 0.999814
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAaGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 1452 0.72 0.99976
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGc-- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 94733 0.72 0.99976
Target:  5'- cGUAUAUAGUUUAaGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 173499 0.71 0.999857
Target:  5'- uGUAUAUAaUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 133704 0.71 0.999891
Target:  5'- --aAUGUAGCgagugagUAuGUGUUAAAGGGUa -3'
miRNA:   3'- ccaUAUAUCGa------AUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 84911 0.69 0.999996
Target:  5'- aGUAUAUAGCUUAaauauUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUccac-AAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 44107 0.69 0.999996
Target:  5'- aGUAUAUAGUUUAGcUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 159783 0.69 0.999991
Target:  5'- aGUAUAUAGCUaa-GUaUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAaucCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 160923 0.7 0.999982
Target:  5'- -aUAUAUAGCaUAGa-GUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGaAUCcaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 133270 0.7 0.999982
Target:  5'- -uUAUAUAaCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 39451 0.7 0.999982
Target:  5'- aGUAUAUAGCUUAGaUGUUAGAauGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUU--CCca -5'
28254 5' -43.2 NC_005902.1 + 127816 0.7 0.999976
Target:  5'- -cUAUAUAGCUUAuGUGUUAAAGaGUa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 175654 0.7 0.999966
Target:  5'- aGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- cCAUAUAUCGAAUcCAcAAUUUCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.