miRNA display CGI


Results 121 - 140 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 48608 0.77 0.986181
Target:  5'- aGUGUAUAGCUUAGaUGUUAAAaGGUg -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 48268 0.77 0.986181
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 184780 0.75 0.996385
Target:  5'- -aUAUAUAGCcUAGGUGUUGAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGaAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 118683 0.75 0.996959
Target:  5'- -aUAUAUAGUUaGGG-GUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAaUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 131703 0.75 0.996959
Target:  5'- -aUAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 1452 0.72 0.99976
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGc-- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 94733 0.72 0.99976
Target:  5'- cGUAUAUAGUUUAaGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 122676 0.72 0.999692
Target:  5'- aGUGUAUAGCUUAGaGaUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUC-C-ACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 100020 0.72 0.999692
Target:  5'- --aAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 97749 0.72 0.999692
Target:  5'- --cAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 42400 0.72 0.999692
Target:  5'- aGUAUAUAGCUUAGGUGUc------- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAauuuccca -5'
28254 5' -43.2 NC_005902.1 + 84969 0.72 0.999692
Target:  5'- -aUAUAUAGUgUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGaAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 75130 0.78 0.982229
Target:  5'- -aUAUAUAGCUUAGGUauaAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcaaUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 118112 0.72 0.999692
Target:  5'- uGUAUAUAGUUaGGG-GUcAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAaUCCaCAaUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 5159 0.72 0.999608
Target:  5'- --gAUAUuGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAuCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 51716 0.72 0.999608
Target:  5'- uGUAUAU-GCUUAaaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAuCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 5216 0.73 0.999379
Target:  5'- aGUAUAUcGCUUAGGUGUUA---GGUa -3'
miRNA:   3'- cCAUAUAuCGAAUCCACAAUuucCCA- -5'
28254 5' -43.2 NC_005902.1 + 107830 0.74 0.998821
Target:  5'- cGUAUAUAGCUUAGaUGUUAAAGa-- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 153066 0.74 0.997455
Target:  5'- aGUAUAUAGUUUAGGUGUUAAc---- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 116814 0.74 0.997455
Target:  5'- aGGaGUAUA-CUUAGGUGUUAAAGGu- -3'
miRNA:   3'- -CCaUAUAUcGAAUCCACAAUUUCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.