Results 1 - 20 of 280 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 80776 | 1.13 | 0.039638 |
Target: 5'- gGGUAUAUAGCUUAGGUGUUAAAGGGUa -3' miRNA: 3'- -CCAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 172857 | 1.11 | 0.047344 |
Target: 5'- gGGUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- -CCAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 20153 | 1.08 | 0.075707 |
Target: 5'- cGUAUAUAGCUUAGGUGUUAAAGGGUa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 42267 | 1.07 | 0.07794 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGGGUa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 57268 | 1.07 | 0.07794 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGGGUa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 86485 | 1.06 | 0.092724 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 131171 | 1.06 | 0.092724 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 94183 | 1.06 | 0.098218 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 28813 | 1.06 | 0.098218 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 138805 | 1.06 | 0.098218 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 23652 | 1.04 | 0.113326 |
Target: 5'- aGUAUGUAGCUUAGGUGUUAAAGGGa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCCCa -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 18886 | 1.04 | 0.113326 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGGGa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCCCa -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 13226 | 1.02 | 0.154483 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGGUa -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 104205 | 1.02 | 0.158833 |
Target: 5'- -uUAUAUAGCUUAGGUGUUAAAGGGUa -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 16919 | 1 | 0.182277 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 88866 | 1 | 0.182277 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 135831 | 1 | 0.182277 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 162785 | 1 | 0.182277 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 54378 | 1 | 0.182277 |
Target: 5'- -aUGUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5' |
|||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 125576 | 1 | 0.182277 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home