miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 80776 1.13 0.039638
Target:  5'- gGGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- -CCAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 142026 0.92 0.460345
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 167292 0.92 0.47048
Target:  5'- uGUAUAUAaCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 50084 0.66 1
Target:  5'- uGUAUAUAGCUUAGGUaUUAAc---- -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 13226 1.02 0.154483
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 104205 1.02 0.158833
Target:  5'- -uUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 54378 1 0.182277
Target:  5'- -aUGUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 125576 1 0.182277
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 39307 0.96 0.308354
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 52205 0.93 0.421014
Target:  5'- aGGUAUAUcaCUUAGGUGUUAAAGGGUg -3'
miRNA:   3'- -CCAUAUAucGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 136088 0.95 0.332178
Target:  5'- uGUAUAUAGCUUAGGaGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 114438 0.96 0.293209
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 20153 1.08 0.075707
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 29494 0.93 0.411501
Target:  5'- -aUAUAUAGCUUAGGUGUUaAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAA-UUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 42267 1.07 0.07794
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 122804 0.96 0.285857
Target:  5'- aGUAUAUAGCUUAGGgGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 154625 0.93 0.411501
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 131155 0.92 0.47048
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 28813 1.06 0.098218
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 16919 1 0.182277
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.