Results 21 - 40 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 111437 | 0.66 | 1 |
Target: 5'- -aUAUAUAGCUUAuauaUUAAAGGGUa -3' miRNA: 3'- ccAUAUAUCGAAUccacAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 77140 | 0.66 | 1 |
Target: 5'- uGUAUAUAGCcUAGcUGUUAAAaGGUu -3' miRNA: 3'- cCAUAUAUCGaAUCcACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 131053 | 0.66 | 1 |
Target: 5'- ----gAUGcCUUAGGgGUUAAAGGGUu -3' miRNA: 3'- ccauaUAUcGAAUCCaCAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 55098 | 0.67 | 1 |
Target: 5'- aGUAUA-AGCuUUAGGauUUAAAGGGUa -3' miRNA: 3'- cCAUAUaUCG-AAUCCacAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 44046 | 0.67 | 1 |
Target: 5'- uGUAUAUAGCUUAaaUGUUAAAGaGUu -3' miRNA: 3'- cCAUAUAUCGAAUccACAAUUUCcCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 183020 | 0.67 | 1 |
Target: 5'- aGUAUAUAGCUUAGaUGUuaauauuuuaaaaacUGAAGGa- -3' miRNA: 3'- cCAUAUAUCGAAUCcACA---------------AUUUCCca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 31126 | 0.67 | 1 |
Target: 5'- aGUAUAUAGCUUGGaUGUUAAAa--- -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 92331 | 0.68 | 0.999999 |
Target: 5'- -cUAUAUAGCUUAGGU---AAAGGa- -3' miRNA: 3'- ccAUAUAUCGAAUCCAcaaUUUCCca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 182665 | 0.68 | 0.999999 |
Target: 5'- -aUGUAUAGCUUAGGUGUa------- -3' miRNA: 3'- ccAUAUAUCGAAUCCACAauuuccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 87226 | 0.68 | 0.999999 |
Target: 5'- aGUAUAUAGCaUAaGUGUUAAAaGGUa -3' miRNA: 3'- cCAUAUAUCGaAUcCACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 16061 | 0.68 | 0.999999 |
Target: 5'- -aUAUAUAGCUUAGa---UAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCcacaAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 177627 | 0.68 | 0.999999 |
Target: 5'- uGUAUAUAGUUUAGGUGUaaAAAGuGa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAa-UUUCcCa -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 81950 | 0.68 | 0.999998 |
Target: 5'- aGUAUAUAGCUUAag---UAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUccacaAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 10429 | 0.68 | 0.999998 |
Target: 5'- uGUAUAcGGCUUAcGUaUUAAAGGGUa -3' miRNA: 3'- cCAUAUaUCGAAUcCAcAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 1294 | 0.69 | 0.999997 |
Target: 5'- -aUAUAUAGCUcAGGUGUUAggauuaauuccuAAGGuGUu -3' miRNA: 3'- ccAUAUAUCGAaUCCACAAU------------UUCC-CA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 36842 | 0.69 | 0.999997 |
Target: 5'- aGUAUAUAGCUUAGGUaUUAAAa--- -3' miRNA: 3'- cCAUAUAUCGAAUCCAcAAUUUccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 170891 | 0.69 | 0.999997 |
Target: 5'- aGUAUAUAGCUUAcaUGUUAAAaGGUu -3' miRNA: 3'- cCAUAUAUCGAAUccACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 54081 | 0.69 | 0.999996 |
Target: 5'- -aUAUAUAGUUUAGGUGUUAAc---- -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUuccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 84911 | 0.69 | 0.999996 |
Target: 5'- aGUAUAUAGCUUAaauauUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUccac-AAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 44107 | 0.69 | 0.999996 |
Target: 5'- aGUAUAUAGUUUAGcUGUUAAAGaGUu -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUCcCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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