miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 3' -41 NC_005902.1 + 117091 0.66 1
Target:  5'- gCUUGcuacAUUUGUUUGUaUAUAGCUUAa -3'
miRNA:   3'- -GGACa---UAAGCAAACAcAUAUCGAAUc -5'
28255 3' -41 NC_005902.1 + 92196 0.66 1
Target:  5'- ------aUUGUUUGUaUAUAGCUUAGg -3'
miRNA:   3'- ggacauaAGCAAACAcAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 154609 0.67 1
Target:  5'- aCUUGcuacacUUGUUUGUaUAUAGCUUAGg -3'
miRNA:   3'- -GGACaua---AGCAAACAcAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 136072 0.67 1
Target:  5'- aCUUGccaUGcUUGUUUGUaUAUAGCUUAGg -3'
miRNA:   3'- -GGAC---AUaAGCAAACAcAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 29599 0.67 1
Target:  5'- aCUaUGcUUGUUUGUaUAUAGCUUAGg -3'
miRNA:   3'- gGAcAUaAGCAAACAcAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 147625 0.67 1
Target:  5'- --aGUAa--GUgaGUGUAUAGCUUAGa -3'
miRNA:   3'- ggaCAUaagCAaaCACAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 149827 0.68 1
Target:  5'- aCUGUAUUUGUUcauaUAUAGCUUAa -3'
miRNA:   3'- gGACAUAAGCAAacacAUAUCGAAUc -5'
28255 3' -41 NC_005902.1 + 131143 0.68 1
Target:  5'- aCUaUGUUCuUUUGUaUAUAGCUUAGg -3'
miRNA:   3'- gGAcAUAAGcAAACAcAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 50137 0.69 1
Target:  5'- aCUGUGcUUGUUUGUacAUAGCUUAa -3'
miRNA:   3'- gGACAUaAGCAAACAcaUAUCGAAUc -5'
28255 3' -41 NC_005902.1 + 142299 0.7 1
Target:  5'- gCUaUAUUUGUUUGUaUAUAGCUUAa -3'
miRNA:   3'- gGAcAUAAGCAAACAcAUAUCGAAUc -5'
28255 3' -41 NC_005902.1 + 184877 0.68 1
Target:  5'- gCUGUAUauaugcUUGUUUGUaUAcAGCUUAGg -3'
miRNA:   3'- gGACAUA------AGCAAACAcAUaUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 87394 0.66 1
Target:  5'- gCUGUGcUCacUUGUaUAUAGCUUAGg -3'
miRNA:   3'- gGACAUaAGcaAACAcAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 146938 0.66 1
Target:  5'- ------cUUGUUUGUaUAUAGCUUAGg -3'
miRNA:   3'- ggacauaAGCAAACAcAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 162416 0.71 0.999999
Target:  5'- aCUUGcuacauuUAUUUGU--GUGUAUAGCUUAGg -3'
miRNA:   3'- -GGAC-------AUAAGCAaaCACAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 137464 0.72 0.999998
Target:  5'- gCUaUGUUUaUUUGUGUAUAGUUUAGg -3'
miRNA:   3'- gGAcAUAAGcAAACACAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 118551 0.72 0.999998
Target:  5'- -aUGUAUUUGUUUGUacAUAGCUUAa -3'
miRNA:   3'- ggACAUAAGCAAACAcaUAUCGAAUc -5'
28255 3' -41 NC_005902.1 + 28800 0.73 0.99999
Target:  5'- aUCUGUGcUCuUUUGUaUAUAGCUUAGg -3'
miRNA:   3'- -GGACAUaAGcAAACAcAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 39289 0.76 0.999558
Target:  5'- aCCaUGUAUauacUUGUUUGUaUAUAGCUUAGg -3'
miRNA:   3'- -GG-ACAUA----AGCAAACAcAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 105295 0.8 0.989907
Target:  5'- aCUGcAUUUGUUUGUaUAUAGCUUAGg -3'
miRNA:   3'- gGACaUAAGCAAACAcAUAUCGAAUC- -5'
28255 3' -41 NC_005902.1 + 162619 0.81 0.984908
Target:  5'- gCUGUAcUUGUUUGUaUAUAGCUUGGg -3'
miRNA:   3'- gGACAUaAGCAAACAcAUAUCGAAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.