Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28255 | 3' | -41 | NC_005902.1 | + | 146938 | 0.66 | 1 |
Target: 5'- ------cUUGUUUGUaUAUAGCUUAGg -3' miRNA: 3'- ggacauaAGCAAACAcAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 154609 | 0.67 | 1 |
Target: 5'- aCUUGcuacacUUGUUUGUaUAUAGCUUAGg -3' miRNA: 3'- -GGACaua---AGCAAACAcAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 136072 | 0.67 | 1 |
Target: 5'- aCUUGccaUGcUUGUUUGUaUAUAGCUUAGg -3' miRNA: 3'- -GGAC---AUaAGCAAACAcAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 29599 | 0.67 | 1 |
Target: 5'- aCUaUGcUUGUUUGUaUAUAGCUUAGg -3' miRNA: 3'- gGAcAUaAGCAAACAcAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 147625 | 0.67 | 1 |
Target: 5'- --aGUAa--GUgaGUGUAUAGCUUAGa -3' miRNA: 3'- ggaCAUaagCAaaCACAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 149827 | 0.68 | 1 |
Target: 5'- aCUGUAUUUGUUcauaUAUAGCUUAa -3' miRNA: 3'- gGACAUAAGCAAacacAUAUCGAAUc -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 131143 | 0.68 | 1 |
Target: 5'- aCUaUGUUCuUUUGUaUAUAGCUUAGg -3' miRNA: 3'- gGAcAUAAGcAAACAcAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 50137 | 0.69 | 1 |
Target: 5'- aCUGUGcUUGUUUGUacAUAGCUUAa -3' miRNA: 3'- gGACAUaAGCAAACAcaUAUCGAAUc -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 92196 | 0.66 | 1 |
Target: 5'- ------aUUGUUUGUaUAUAGCUUAGg -3' miRNA: 3'- ggacauaAGCAAACAcAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 117091 | 0.66 | 1 |
Target: 5'- gCUUGcuacAUUUGUUUGUaUAUAGCUUAa -3' miRNA: 3'- -GGACa---UAAGCAAACAcAUAUCGAAUc -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 87394 | 0.66 | 1 |
Target: 5'- gCUGUGcUCacUUGUaUAUAGCUUAGg -3' miRNA: 3'- gGACAUaAGcaAACAcAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 184877 | 0.68 | 1 |
Target: 5'- gCUGUAUauaugcUUGUUUGUaUAcAGCUUAGg -3' miRNA: 3'- gGACAUA------AGCAAACAcAUaUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 142299 | 0.7 | 1 |
Target: 5'- gCUaUAUUUGUUUGUaUAUAGCUUAa -3' miRNA: 3'- gGAcAUAAGCAAACAcAUAUCGAAUc -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 162416 | 0.71 | 0.999999 |
Target: 5'- aCUUGcuacauuUAUUUGU--GUGUAUAGCUUAGg -3' miRNA: 3'- -GGAC-------AUAAGCAaaCACAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 118551 | 0.72 | 0.999998 |
Target: 5'- -aUGUAUUUGUUUGUacAUAGCUUAa -3' miRNA: 3'- ggACAUAAGCAAACAcaUAUCGAAUc -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 137464 | 0.72 | 0.999998 |
Target: 5'- gCUaUGUUUaUUUGUGUAUAGUUUAGg -3' miRNA: 3'- gGAcAUAAGcAAACACAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 28800 | 0.73 | 0.99999 |
Target: 5'- aUCUGUGcUCuUUUGUaUAUAGCUUAGg -3' miRNA: 3'- -GGACAUaAGcAAACAcAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 39289 | 0.76 | 0.999558 |
Target: 5'- aCCaUGUAUauacUUGUUUGUaUAUAGCUUAGg -3' miRNA: 3'- -GG-ACAUA----AGCAAACAcAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 105295 | 0.8 | 0.989907 |
Target: 5'- aCUGcAUUUGUUUGUaUAUAGCUUAGg -3' miRNA: 3'- gGACaUAAGCAAACAcAUAUCGAAUC- -5' |
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28255 | 3' | -41 | NC_005902.1 | + | 162619 | 0.81 | 0.984908 |
Target: 5'- gCUGUAcUUGUUUGUaUAUAGCUUGGg -3' miRNA: 3'- gGACAUaAGCAAACAcAUAUCGAAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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