Results 61 - 80 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 91866 | 0.77 | 0.955733 |
Target: 5'- cACCUAAGCUAUAUacaaauaAGaGUAGCAAAUGa -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCgUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 90246 | 0.66 | 0.999997 |
Target: 5'- uACUUAAaUUAUAUaaacaAGCAUAGCAAGUGa -3' miRNA: 3'- -UGGAUUcGAUAUG-----UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 90066 | 0.67 | 0.999992 |
Target: 5'- cACCUAAGUUAUAUacaAGUGUAaCAAGUGa -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGUAUcGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 88303 | 0.67 | 0.999984 |
Target: 5'- cACCUAAGCUAUAU-GCAaauaaauauaUAGCuuAGAUAa -3' miRNA: 3'- -UGGAUUCGAUAUGuCGU----------AUCG--UUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 86451 | 0.67 | 0.999983 |
Target: 5'- cACUUAAGCUAUAUacaaauaAGUGcAGCGAAUGa -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 86399 | 0.69 | 0.999897 |
Target: 5'- cACCUAAGCUAUAUacaAGUG-AGCAuAUAc -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGUaUCGUuUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 81845 | 0.69 | 0.999763 |
Target: 5'- cACCUAAGCUAUAUAaacaaauGCuaAGUAAGUAu -3' miRNA: 3'- -UGGAUUCGAUAUGU-------CGuaUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 81290 | 0.8 | 0.842356 |
Target: 5'- cAUCUAAGCUAUAUacaaauaAGUAUAGCAAGUGa -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 81184 | 0.82 | 0.775512 |
Target: 5'- uACCUAAGCUAUAUaugAGCGUaacaAGCAAGUAu -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGUA----UCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 81060 | 0.83 | 0.743894 |
Target: 5'- cAUCUAAGCUAUACaauuaAGCAUAGCAAGc- -3' miRNA: 3'- -UGGAUUCGAUAUG-----UCGUAUCGUUUau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 80743 | 0.72 | 0.997442 |
Target: 5'- cACCUAAGCUAUAUAcaaacaaauGCAgugAGUggGUAu -3' miRNA: 3'- -UGGAUUCGAUAUGU---------CGUa--UCGuuUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 78086 | 0.77 | 0.955733 |
Target: 5'- cCUUAAGCUAUAUaugacuaAGUAUAGCGAAUAa -3' miRNA: 3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 76880 | 0.66 | 0.999999 |
Target: 5'- uAUCUAAGCUAUAUauaaaaacaAGUAcuGCAAGUAa -3' miRNA: 3'- -UGGAUUCGAUAUG---------UCGUauCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 75911 | 0.83 | 0.722196 |
Target: 5'- uACCUAAGCUAUAUacaAGCAagggUAGCAAAUGa -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGU----AUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 73105 | 0.72 | 0.997394 |
Target: 5'- aACCUAAaUUAUAUauaagcaAGCAUAGCAAGUAa -3' miRNA: 3'- -UGGAUUcGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 67715 | 0.72 | 0.997877 |
Target: 5'- uCCUAGGCUAUAUAGaaauUAGCAu--- -3' miRNA: 3'- uGGAUUCGAUAUGUCgu--AUCGUuuau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 61629 | 0.68 | 0.999943 |
Target: 5'- cAUCUAAGCUAUAUacaaaugauugAGUAUAGCuuAGAUGu -3' miRNA: 3'- -UGGAUUCGAUAUG-----------UCGUAUCG--UUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 58821 | 0.69 | 0.999769 |
Target: 5'- aACUUAAGCUAUA-AGCAaAGCAuAUAc -3' miRNA: 3'- -UGGAUUCGAUAUgUCGUaUCGUuUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 58626 | 0.69 | 0.999817 |
Target: 5'- gACUUAAGCUGUAUauaaacaAGCGUAaCAAGUGa -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAUcGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 56216 | 0.69 | 0.999822 |
Target: 5'- cGCCUAAuaUAU-CAGCAUGGgAAGUGu -3' miRNA: 3'- -UGGAUUcgAUAuGUCGUAUCgUUUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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