Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 157086 | 1.08 | 0.039952 |
Target: 5'- cACCUAAGCUAUACAGCAUAGCAAAUAa -3' miRNA: 3'- -UGGAUUCGAUAUGUCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 46943 | 0.94 | 0.260265 |
Target: 5'- uACCUAAGCUAUAUgcaAGCAUAGCAAGUGa -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 140928 | 0.91 | 0.33559 |
Target: 5'- cACCUAAGCUAUAUacgaacaAGCAUAGCAAGUAa -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 135965 | 0.9 | 0.370244 |
Target: 5'- uACCUAAGCUAUAUacaagugAGCAUAGCAAAUGa -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 159749 | 0.9 | 0.379282 |
Target: 5'- uACCUAAGCUAUAUauaaaugAGCGUAGCAAGUAa -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 1419 | 0.87 | 0.519895 |
Target: 5'- cCCUAAGCUAUAUacgaaugAGCAUAGCAAGUGa -3' miRNA: 3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 49962 | 0.86 | 0.575067 |
Target: 5'- uCCUAAGCUAUAUacaaacaAGCAUGGCAAGUGa -3' miRNA: 3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 51617 | 0.86 | 0.587408 |
Target: 5'- uACCUAAGCUGUGaauaAGCGUAGCGAGc- -3' miRNA: 3'- -UGGAUUCGAUAUg---UCGUAUCGUUUau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 156439 | 0.85 | 0.63146 |
Target: 5'- cACCUAAGCUAUAUacaaacaAGCAUAGUGAGUAa -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 31425 | 0.84 | 0.687852 |
Target: 5'- uACCUAAGCUAUAUacaaacaAGUGUAGCAAGUGa -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 109367 | 0.83 | 0.722196 |
Target: 5'- cACUUAAGCUAUAUauaAGCAUAGCAAAc- -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGUAUCGUUUau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 75911 | 0.83 | 0.722196 |
Target: 5'- uACCUAAGCUAUAUacaAGCAagggUAGCAAAUGa -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGU----AUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 81060 | 0.83 | 0.743894 |
Target: 5'- cAUCUAAGCUAUACaauuaAGCAUAGCAAGc- -3' miRNA: 3'- -UGGAUUCGAUAUG-----UCGUAUCGUUUau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 28162 | 0.83 | 0.743894 |
Target: 5'- cACCUAAGCUAUAUaaAGUGUAGCAAGc- -3' miRNA: 3'- -UGGAUUCGAUAUG--UCGUAUCGUUUau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 177836 | 0.82 | 0.774479 |
Target: 5'- uGCCUAAGCUAUAUacaagugAGCAUAGUAAAc- -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUau -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 81184 | 0.82 | 0.775512 |
Target: 5'- uACCUAAGCUAUAUaugAGCGUaacaAGCAAGUAu -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGUA----UCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 116891 | 0.81 | 0.805719 |
Target: 5'- uCCUAAGaCUAUACaagugAGCAUAGCAAAUGa -3' miRNA: 3'- uGGAUUC-GAUAUG-----UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 98948 | 0.81 | 0.815418 |
Target: 5'- cCCUAAGCUAUAUaaugAGUAUAGUAAGUAa -3' miRNA: 3'- uGGAUUCGAUAUG----UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 158341 | 0.81 | 0.824914 |
Target: 5'- uACCUAGGCUgcuauAUACuaacaAGCGUAGCAAAUAa -3' miRNA: 3'- -UGGAUUCGA-----UAUG-----UCGUAUCGUUUAU- -5' |
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28255 | 5' | -44.4 | NC_005902.1 | + | 172824 | 0.81 | 0.833277 |
Target: 5'- cACCUAAGCUAUAUaugaguaAGCAUcGCAAAUGg -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUAuCGUUUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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