miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 157086 1.08 0.039952
Target:  5'- cACCUAAGCUAUACAGCAUAGCAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUGUCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 46943 0.94 0.260265
Target:  5'- uACCUAAGCUAUAUgcaAGCAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 140928 0.91 0.33559
Target:  5'- cACCUAAGCUAUAUacgaacaAGCAUAGCAAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 135965 0.9 0.370244
Target:  5'- uACCUAAGCUAUAUacaagugAGCAUAGCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 159749 0.9 0.379282
Target:  5'- uACCUAAGCUAUAUauaaaugAGCGUAGCAAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 1419 0.87 0.519895
Target:  5'- cCCUAAGCUAUAUacgaaugAGCAUAGCAAGUGa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 49962 0.86 0.575067
Target:  5'- uCCUAAGCUAUAUacaaacaAGCAUGGCAAGUGa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 51617 0.86 0.587408
Target:  5'- uACCUAAGCUGUGaauaAGCGUAGCGAGc- -3'
miRNA:   3'- -UGGAUUCGAUAUg---UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 156439 0.85 0.63146
Target:  5'- cACCUAAGCUAUAUacaaacaAGCAUAGUGAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 31425 0.84 0.687852
Target:  5'- uACCUAAGCUAUAUacaaacaAGUGUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 109367 0.83 0.722196
Target:  5'- cACUUAAGCUAUAUauaAGCAUAGCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 75911 0.83 0.722196
Target:  5'- uACCUAAGCUAUAUacaAGCAagggUAGCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGU----AUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 81060 0.83 0.743894
Target:  5'- cAUCUAAGCUAUACaauuaAGCAUAGCAAGc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 28162 0.83 0.743894
Target:  5'- cACCUAAGCUAUAUaaAGUGUAGCAAGc- -3'
miRNA:   3'- -UGGAUUCGAUAUG--UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 177836 0.82 0.774479
Target:  5'- uGCCUAAGCUAUAUacaagugAGCAUAGUAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 81184 0.82 0.775512
Target:  5'- uACCUAAGCUAUAUaugAGCGUaacaAGCAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUA----UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 116891 0.81 0.805719
Target:  5'- uCCUAAGaCUAUACaagugAGCAUAGCAAAUGa -3'
miRNA:   3'- uGGAUUC-GAUAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 98948 0.81 0.815418
Target:  5'- cCCUAAGCUAUAUaaugAGUAUAGUAAGUAa -3'
miRNA:   3'- uGGAUUCGAUAUG----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 158341 0.81 0.824914
Target:  5'- uACCUAGGCUgcuauAUACuaacaAGCGUAGCAAAUAa -3'
miRNA:   3'- -UGGAUUCGA-----UAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 172824 0.81 0.833277
Target:  5'- cACCUAAGCUAUAUaugaguaAGCAUcGCAAAUGg -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAuCGUUUAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.