miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 1154 0.66 0.999996
Target:  5'- gACCUAAGCUGUAUA-CAaacaAGCAuAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUa---UCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 1419 0.87 0.519895
Target:  5'- cCCUAAGCUAUAUacgaaugAGCAUAGCAAGUGa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 3385 0.74 0.989158
Target:  5'- cACCUAAGCUAUACAuacaaCAUAGCu---- -3'
miRNA:   3'- -UGGAUUCGAUAUGUc----GUAUCGuuuau -5'
28255 5' -44.4 NC_005902.1 + 4782 0.67 0.999988
Target:  5'- cCCUAcGCUAUAUacaaauaAGCAUagugAGCAAGUAu -3'
miRNA:   3'- uGGAUuCGAUAUG-------UCGUA----UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 12184 0.66 0.999998
Target:  5'- uCCUAAGguUUAUAUaagugAGCAUAGCAAAc- -3'
miRNA:   3'- uGGAUUC--GAUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 13404 0.68 0.999969
Target:  5'- uACCUAAGCUAUAUaugugAGUAUAaCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-----UCGUAUcGUUUau -5'
28255 5' -44.4 NC_005902.1 + 15432 0.69 0.999861
Target:  5'- cACCUAAGCUAUAUauaaauaAGCAUauauaGGuCAGGUGu -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUA-----UC-GUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 16885 0.72 0.997877
Target:  5'- cACCUAAGCUAUAUcaaguaAGCAUAuCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG------UCGUAUcGUUUau -5'
28255 5' -44.4 NC_005902.1 + 18758 0.76 0.963682
Target:  5'- cACCUAAGUUAUAUacaaguaAGCAUAGUAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 18865 0.69 0.999769
Target:  5'- cACCUAAGCUAUAUAcGCuuaAGUAuAUAg -3'
miRNA:   3'- -UGGAUUCGAUAUGU-CGua-UCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 23265 0.68 0.999978
Target:  5'- cACCUAAGCUAUAUAuucacacuuGCAuaUAGCuuAAAUGu -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGU--AUCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 23296 0.68 0.999943
Target:  5'- uACCUAAGCUAUAUAuGaaugAGUGAAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU-Cgua-UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 23317 0.73 0.993001
Target:  5'- cAUCUAAGCUAUAUguaAGCAUuGCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUAuCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 23419 0.67 0.999992
Target:  5'- cACCcAAGCUAUAUacaaacaAGUAcAGCAAGUGa -3'
miRNA:   3'- -UGGaUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 23616 0.78 0.919621
Target:  5'- cACCUAAGCUAUACA-CAcaaauaaaugUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGU----------AUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 27888 0.66 0.999996
Target:  5'- uGCCUAAGCUAUAUAuGCAUuuGUu---- -3'
miRNA:   3'- -UGGAUUCGAUAUGU-CGUAu-CGuuuau -5'
28255 5' -44.4 NC_005902.1 + 28162 0.83 0.743894
Target:  5'- cACCUAAGCUAUAUaaAGUGUAGCAAGc- -3'
miRNA:   3'- -UGGAUUCGAUAUG--UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 28984 0.67 0.999992
Target:  5'- cACCUAAGCUAUACA-CAaa-CGAAUAc -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUaucGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 29221 0.72 0.996879
Target:  5'- cACCUAAGCUAUAUaugaacaAGUAUAaCAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUcGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 29282 0.67 0.999995
Target:  5'- aAUCUAAGCcaUAUACAaaCGUAGUAAGUAa -3'
miRNA:   3'- -UGGAUUCG--AUAUGUc-GUAUCGUUUAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.