miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 46943 0.94 0.260265
Target:  5'- uACCUAAGCUAUAUgcaAGCAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 97184 0.75 0.981462
Target:  5'- cACCUAAGCUAUAUaugaaugAGgAUAGUGAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCgUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 3385 0.74 0.989158
Target:  5'- cACCUAAGCUAUACAuacaaCAUAGCu---- -3'
miRNA:   3'- -UGGAUUCGAUAUGUc----GUAUCGuuuau -5'
28255 5' -44.4 NC_005902.1 + 108911 0.65 0.999999
Target:  5'- -gCUAGGCUAUAUacaaauaAGaGUAGCGAGUGa -3'
miRNA:   3'- ugGAUUCGAUAUG-------UCgUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 109925 0.8 0.860651
Target:  5'- gACCUAAGCUAUAU-GCAaacaUAGCGAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGuCGU----AUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 92017 0.79 0.892361
Target:  5'- uACCUAAGCUAUAUAugaguaaaCAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGUc-------GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 110920 0.78 0.918996
Target:  5'- uACCUAAGCUAUAUaugagugGGUAUAGUAAGUu -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAu -5'
28255 5' -44.4 NC_005902.1 + 36171 0.78 0.918996
Target:  5'- cAUCUAAGCUAUAUauaaacaAGUGUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 91866 0.77 0.955733
Target:  5'- cACCUAAGCUAUAUacaaauaAGaGUAGCAAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCgUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 137782 0.75 0.979328
Target:  5'- cACCUAAGCUAUAUauacaaauaAGUAUagugAGCAAAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG---------UCGUA----UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 107150 0.76 0.967258
Target:  5'- cUCUAAGCUAUAUauaaacaAGUGUAGCAAAUGa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 78086 0.77 0.955733
Target:  5'- cCUUAAGCUAUAUaugacuaAGUAUAGCGAAUAa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 98644 0.81 0.833277
Target:  5'- uACCUAAGCUAUAUacaagugAGCAcAGCGAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 147599 0.75 0.973647
Target:  5'- cACCUAAGCUAUAUauaaaugAGCGcAGUAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 81290 0.8 0.842356
Target:  5'- cAUCUAAGCUAUAUacaaauaAGUAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 174601 0.77 0.951346
Target:  5'- cACCUAAGCUAUAUacgaaugAGCAcAGCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 104899 0.75 0.97908
Target:  5'- cCUUAAGUUAUAUauaaacgAGCAUAGCGAGUGa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 93434 0.74 0.987564
Target:  5'- uAUUUAAGCUAUG-AGCAUAGUGAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUgUCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 116959 0.8 0.851202
Target:  5'- uCUUAAGCUAUAUacaaguaAGCAUAGCAAAUGu -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 110876 0.79 0.892361
Target:  5'- uACCUAAGUUAUAUAGCAU-GUggGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGUCGUAuCGuuUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.