miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 145054 0.67 0.999984
Target:  5'- cACCUAAGCUAUAUgugAGUguauAUAGCuuAGGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCG----UAUCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 86451 0.67 0.999983
Target:  5'- cACUUAAGCUAUAUacaaauaAGUGcAGCGAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 23265 0.68 0.999978
Target:  5'- cACCUAAGCUAUAUAuucacacuuGCAuaUAGCuuAAAUGu -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGU--AUCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 167164 0.68 0.999969
Target:  5'- cACCUAAGCUAUAUacuuaAGCGUauauAGCuuAGGUGu -3'
miRNA:   3'- -UGGAUUCGAUAUG-----UCGUA----UCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 181400 0.68 0.999969
Target:  5'- cCCUAAGUUAUAUaaacuAGCAUaaagAGUAAGUAu -3'
miRNA:   3'- uGGAUUCGAUAUG-----UCGUA----UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 13404 0.68 0.999969
Target:  5'- uACCUAAGCUAUAUaugugAGUAUAaCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG-----UCGUAUcGUUUau -5'
28255 5' -44.4 NC_005902.1 + 142161 0.68 0.999969
Target:  5'- uAUUUAAGCUAUAUAugaaCAUAGUAAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUGUc---GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 148791 0.68 0.999967
Target:  5'- aGCUUAAGUguuaagauaaaguUAUACauaagcaAGCGUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCG-------------AUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 143776 0.68 0.999958
Target:  5'- uCCUAAgGCuUAUACaagugAGCAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CG-AUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 23296 0.68 0.999943
Target:  5'- uACCUAAGCUAUAUAuGaaugAGUGAAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU-Cgua-UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 61629 0.68 0.999943
Target:  5'- cAUCUAAGCUAUAUacaaaugauugAGUAUAGCuuAGAUGu -3'
miRNA:   3'- -UGGAUUCGAUAUG-----------UCGUAUCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 153654 0.68 0.999941
Target:  5'- cACUUAAaCUAUAUacgaacaAGCGUAGCGAGUGa -3'
miRNA:   3'- -UGGAUUcGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 163517 0.68 0.999923
Target:  5'- cAUCUAAGCUAUAaacaAGCGUAuuGAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUg---UCGUAUcgUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 54894 0.68 0.999923
Target:  5'- uACCUAAGCUAUAUAcaaaagaaCAUAGUGAAa- -3'
miRNA:   3'- -UGGAUUCGAUAUGUc-------GUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 151197 0.68 0.999923
Target:  5'- cACCUAAGUuaUAUAUAGaUGUAGUGAAUGa -3'
miRNA:   3'- -UGGAUUCG--AUAUGUC-GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 117012 0.68 0.999923
Target:  5'- uCCUAAGUcuUAUACaAGUgaacGUAGCAAAUAg -3'
miRNA:   3'- uGGAUUCG--AUAUG-UCG----UAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 178372 0.69 0.999897
Target:  5'- uACCUAAGCUAUAUA-CA-AGCAuAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUaUCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 135821 0.69 0.999897
Target:  5'- cACCUAAGCUAUAUauAGCuUAGguGu-- -3'
miRNA:   3'- -UGGAUUCGAUAUG--UCGuAUCguUuau -5'
28255 5' -44.4 NC_005902.1 + 86399 0.69 0.999897
Target:  5'- cACCUAAGCUAUAUacaAGUG-AGCAuAUAc -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUaUCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 44023 0.69 0.999897
Target:  5'- cACCUAAGCUAUAUAcacGCAUuuGUAuAUAg -3'
miRNA:   3'- -UGGAUUCGAUAUGU---CGUAu-CGUuUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.