miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 1145 0.9 0.653964
Target:  5'- aCCCUUUAAgACCUAAGCUGUAUAc-- -3'
miRNA:   3'- -GGGAAAUUgUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 1203 0.72 0.99998
Target:  5'- ---gUUAACACCUAAGUUAUAUAc-- -3'
miRNA:   3'- gggaAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 1261 0.88 0.73129
Target:  5'- aCUCUUcAACACCUAGGCUAUAUAUAa -3'
miRNA:   3'- -GGGAAaUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 1408 0.74 0.999558
Target:  5'- aCCUuuUUAACcCCUAAGCUAUAUAc-- -3'
miRNA:   3'- gGGA--AAUUGuGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 1711 0.74 0.999728
Target:  5'- uUCUUUAAUAUCUAAGCUAUAUu--- -3'
miRNA:   3'- gGGAAAUUGUGGAUUCGAUAUGuaug -5'
28256 3' -42 NC_005902.1 + 3005 0.73 0.999854
Target:  5'- aUCCUucaguuuuuaaaauaUUAACAUCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGA---------------AAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 3077 0.93 0.510078
Target:  5'- --aUUUAACACCUAAGCUAUAUAUACa -3'
miRNA:   3'- gggAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 3188 0.66 1
Target:  5'- aCUCUUUAACACUU---CUGUGCAgUGCc -3'
miRNA:   3'- -GGGAAAUUGUGGAuucGAUAUGU-AUG- -5'
28256 3' -42 NC_005902.1 + 3362 0.91 0.605695
Target:  5'- aUCUUUUAguuuuuaaaggguuACACCUAAGCUAUACAUACa -3'
miRNA:   3'- -GGGAAAU--------------UGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 4195 0.77 0.996624
Target:  5'- aCCUUUUAAUAUUUAAGCUAUAUAa-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 4610 0.84 0.882583
Target:  5'- aUCCUUUAACAUCUAAGCg--AUAUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGauaUGUAUG- -5'
28256 3' -42 NC_005902.1 + 5113 0.78 0.992443
Target:  5'- aCUCUUUAACAUCUAAGCaAUAUAUuuGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGaUAUGUA--UG- -5'
28256 3' -42 NC_005902.1 + 5383 0.74 0.999558
Target:  5'- aCCUUUUAACAaCUAAaCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUgGAUUcGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 5648 0.78 0.989907
Target:  5'- aCCCUUUAACAaUUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUgGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 6254 0.69 1
Target:  5'- ---gUUAACACCgAAGCcAUAUAUACa -3'
miRNA:   3'- gggaAAUUGUGGaUUCGaUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 6306 0.75 0.999285
Target:  5'- aCCCUUUAAUcuuuaagACCUAAGCcaUAUACAa-- -3'
miRNA:   3'- -GGGAAAUUG-------UGGAUUCG--AUAUGUaug -5'
28256 3' -42 NC_005902.1 + 7600 0.79 0.982879
Target:  5'- aCCCUUUAACACCUAAau--UAUAUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcgauAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 8172 0.68 1
Target:  5'- aUCCU--AACAUUUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAaaUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 8414 0.7 0.999998
Target:  5'- aCUUUUUAACACCUAAaCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 10386 0.72 0.999972
Target:  5'- cCCCUUUAAUACUUAAaCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.