Results 1 - 20 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28256 | 3' | -42 | NC_005902.1 | + | 1145 | 0.9 | 0.653964 |
Target: 5'- aCCCUUUAAgACCUAAGCUGUAUAc-- -3' miRNA: 3'- -GGGAAAUUgUGGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 1203 | 0.72 | 0.99998 |
Target: 5'- ---gUUAACACCUAAGUUAUAUAc-- -3' miRNA: 3'- gggaAAUUGUGGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 1261 | 0.88 | 0.73129 |
Target: 5'- aCUCUUcAACACCUAGGCUAUAUAUAa -3' miRNA: 3'- -GGGAAaUUGUGGAUUCGAUAUGUAUg -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 1408 | 0.74 | 0.999558 |
Target: 5'- aCCUuuUUAACcCCUAAGCUAUAUAc-- -3' miRNA: 3'- gGGA--AAUUGuGGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 1711 | 0.74 | 0.999728 |
Target: 5'- uUCUUUAAUAUCUAAGCUAUAUu--- -3' miRNA: 3'- gGGAAAUUGUGGAUUCGAUAUGuaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 3005 | 0.73 | 0.999854 |
Target: 5'- aUCCUucaguuuuuaaaauaUUAACAUCUAAGCUAUAUAc-- -3' miRNA: 3'- -GGGA---------------AAUUGUGGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 3077 | 0.93 | 0.510078 |
Target: 5'- --aUUUAACACCUAAGCUAUAUAUACa -3' miRNA: 3'- gggAAAUUGUGGAUUCGAUAUGUAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 3188 | 0.66 | 1 |
Target: 5'- aCUCUUUAACACUU---CUGUGCAgUGCc -3' miRNA: 3'- -GGGAAAUUGUGGAuucGAUAUGU-AUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 3362 | 0.91 | 0.605695 |
Target: 5'- aUCUUUUAguuuuuaaaggguuACACCUAAGCUAUACAUACa -3' miRNA: 3'- -GGGAAAU--------------UGUGGAUUCGAUAUGUAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 4195 | 0.77 | 0.996624 |
Target: 5'- aCCUUUUAAUAUUUAAGCUAUAUAa-- -3' miRNA: 3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 4610 | 0.84 | 0.882583 |
Target: 5'- aUCCUUUAACAUCUAAGCg--AUAUACu -3' miRNA: 3'- -GGGAAAUUGUGGAUUCGauaUGUAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 5113 | 0.78 | 0.992443 |
Target: 5'- aCUCUUUAACAUCUAAGCaAUAUAUuuGCu -3' miRNA: 3'- -GGGAAAUUGUGGAUUCGaUAUGUA--UG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 5383 | 0.74 | 0.999558 |
Target: 5'- aCCUUUUAACAaCUAAaCUAUAUAUACa -3' miRNA: 3'- -GGGAAAUUGUgGAUUcGAUAUGUAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 5648 | 0.78 | 0.989907 |
Target: 5'- aCCCUUUAACAaUUAAGCUAUAUAc-- -3' miRNA: 3'- -GGGAAAUUGUgGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 6254 | 0.69 | 1 |
Target: 5'- ---gUUAACACCgAAGCcAUAUAUACa -3' miRNA: 3'- gggaAAUUGUGGaUUCGaUAUGUAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 6306 | 0.75 | 0.999285 |
Target: 5'- aCCCUUUAAUcuuuaagACCUAAGCcaUAUACAa-- -3' miRNA: 3'- -GGGAAAUUG-------UGGAUUCG--AUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 7600 | 0.79 | 0.982879 |
Target: 5'- aCCCUUUAACACCUAAau--UAUAUACu -3' miRNA: 3'- -GGGAAAUUGUGGAUUcgauAUGUAUG- -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 8172 | 0.68 | 1 |
Target: 5'- aUCCU--AACAUUUAAGCUAUAUAc-- -3' miRNA: 3'- -GGGAaaUUGUGGAUUCGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 8414 | 0.7 | 0.999998 |
Target: 5'- aCUUUUUAACACCUAAaCUAUAUAc-- -3' miRNA: 3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5' |
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28256 | 3' | -42 | NC_005902.1 | + | 10386 | 0.72 | 0.999972 |
Target: 5'- cCCCUUUAAUACUUAAaCUAUAUAc-- -3' miRNA: 3'- -GGGAAAUUGUGGAUUcGAUAUGUaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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