miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28256 3' -42 NC_005902.1 + 50210 1.05 0.135678
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUAg -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 40967 0.97 0.354503
Target:  5'- aCCCUUUAAUACCUAAGCUAUAUAcACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 30797 0.96 0.390188
Target:  5'- aCCCUUUAACAUCUAAGCUAUAUAcGCu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 40914 0.66 1
Target:  5'- aUCC-UUAAUACCUAAaGCUAUAaaguguUGCu -3'
miRNA:   3'- -GGGaAAUUGUGGAUU-CGAUAUgu----AUG- -5'
28256 3' -42 NC_005902.1 + 47235 1.02 0.189693
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAcACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaUG- -5'
28256 3' -42 NC_005902.1 + 48253 1.01 0.223251
Target:  5'- aUCCUUUAACACUUAAGCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 137773 0.99 0.275698
Target:  5'- aCUUUUUAACACCUAAGCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 13182 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 128772 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 21167 0.97 0.337544
Target:  5'- uCCCUUUAACACUUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 167155 0.98 0.305422
Target:  5'- uCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 99556 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 97436 1.05 0.135678
Target:  5'- aCCCUUUAACACCUAAGCUAUACuUACu -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGuAUG- -5'
28256 3' -42 NC_005902.1 + 85905 0.98 0.313228
Target:  5'- cCCCUUUAACAUCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 97175 1.05 0.147684
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 91857 0.99 0.275698
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAc-- -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUaug -5'
28256 3' -42 NC_005902.1 + 170700 0.97 0.329288
Target:  5'- aCUCUUUAACACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5'
28256 3' -42 NC_005902.1 + 113784 0.96 0.363205
Target:  5'- aCCCUUUAACAaCUAAGCUAUAUAUACa -3'
miRNA:   3'- -GGGAAAUUGUgGAUUCGAUAUGUAUG- -5'
28256 3' -42 NC_005902.1 + 23256 1.02 0.189693
Target:  5'- aCCCUUUAACACCUAAGCUAUAUAUucACa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUA--UG- -5'
28256 3' -42 NC_005902.1 + 54050 1 0.254956
Target:  5'- aUCCUUUAACACCUAAGCUAUAUAUGa -3'
miRNA:   3'- -GGGAAAUUGUGGAUUCGAUAUGUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.