Results 41 - 60 of 273 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 135222 | 0.66 | 1 |
Target: 5'- ---aGUAUAUAGUUUAGaUGUUAAa- -3' miRNA: 3'- cguaUAUAUAUCGAAUCcACAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 158160 | 0.66 | 1 |
Target: 5'- uGCA--UAUAUAGCUUAGGcaUUAAc- -3' miRNA: 3'- -CGUauAUAUAUCGAAUCCacAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 162625 | 0.66 | 1 |
Target: 5'- aCAaGUAUAUAGCUUGaauGUGUUAGc- -3' miRNA: 3'- cGUaUAUAUAUCGAAUc--CACAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 50051 | 0.66 | 1 |
Target: 5'- -aGUGaAUAUA-CUUAGGUGUUAAa- -3' miRNA: 3'- cgUAUaUAUAUcGAAUCCACAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 15453 | 0.66 | 1 |
Target: 5'- aGCAUAUAUA-GGUc-AGGUGUUAc-- -3' miRNA: 3'- -CGUAUAUAUaUCGaaUCCACAAUuag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 178441 | 0.67 | 1 |
Target: 5'- ---aGUAUAUAaUUUAGGUGUUAAa- -3' miRNA: 3'- cguaUAUAUAUcGAAUCCACAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 38284 | 0.67 | 1 |
Target: 5'- -gAUGUGguUAUAGCUUAGaUGUUAAa- -3' miRNA: 3'- cgUAUAU--AUAUCGAAUCcACAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 153113 | 0.7 | 1 |
Target: 5'- aCAaGUAUA-AGuUUUAGGUGUUAAUCu -3' miRNA: 3'- cGUaUAUAUaUC-GAAUCCACAAUUAG- -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 77182 | 0.69 | 1 |
Target: 5'- --uUAUAUAUAaUUUAGGUGUUGAa- -3' miRNA: 3'- cguAUAUAUAUcGAAUCCACAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 122676 | 0.7 | 1 |
Target: 5'- ---aGUGUAUAGCUUAGaGaUGUUAAa- -3' miRNA: 3'- cguaUAUAUAUCGAAUC-C-ACAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 23321 | 0.69 | 1 |
Target: 5'- ---aAUAUGUAGCUUAGGUa------ -3' miRNA: 3'- cguaUAUAUAUCGAAUCCAcaauuag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 76115 | 0.69 | 1 |
Target: 5'- cGCuAUGUuugcAUAUAGCUUAGGUcUUAAa- -3' miRNA: 3'- -CG-UAUA----UAUAUCGAAUCCAcAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 12860 | 0.69 | 1 |
Target: 5'- aCGUGUAUAUAaCUUAGGaGUUAAg- -3' miRNA: 3'- cGUAUAUAUAUcGAAUCCaCAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 156583 | 0.68 | 1 |
Target: 5'- uGCuuguuUAUAUAUAaUUUGGGUGUUAAa- -3' miRNA: 3'- -CGu----AUAUAUAUcGAAUCCACAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 73969 | 0.68 | 1 |
Target: 5'- --uUAUAUAUGaUUUAGGUGUUAAa- -3' miRNA: 3'- cguAUAUAUAUcGAAUCCACAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 78896 | 0.68 | 1 |
Target: 5'- uGUuUAUAUAUAGCUUagaGGGUGg----- -3' miRNA: 3'- -CGuAUAUAUAUCGAA---UCCACaauuag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 16490 | 0.68 | 1 |
Target: 5'- cGCAUGUAUAUAGCUUAa--------- -3' miRNA: 3'- -CGUAUAUAUAUCGAAUccacaauuag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 139102 | 0.68 | 1 |
Target: 5'- uGCuUGcAUAUAGCUUAGGUaUUAAc- -3' miRNA: 3'- -CGuAUaUAUAUCGAAUCCAcAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 100978 | 0.67 | 1 |
Target: 5'- aGCAUguaaGUAUAUAGCcUAGaUGUUAAa- -3' miRNA: 3'- -CGUA----UAUAUAUCGaAUCcACAAUUag -5' |
|||||||
28256 | 5' | -38.2 | NC_005902.1 | + | 15188 | 0.67 | 1 |
Target: 5'- aGUuUGUAUAUAGCUUAcaUGUUAAa- -3' miRNA: 3'- -CGuAUAUAUAUCGAAUccACAAUUag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home