miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 36022 0.78 0.7842
Target:  5'- gACCCUccaagauuaacuagUUAACUCCuaAUGUGUCAUCAAc -3'
miRNA:   3'- -UGGGA--------------AAUUGAGG--UACGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 104142 0.78 0.767345
Target:  5'- cACCUUUUAACUCCAUGuUGUUAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 16803 0.78 0.791013
Target:  5'- aACCCUUUAACUCCuaaggcAUcauugaugacacaaaGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG------UA---------------CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 169194 0.78 0.787129
Target:  5'- uACCUUUUAACUCUAUGuUGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 90488 0.78 0.79679
Target:  5'- aACCCUUUAACUCUuaagGCaUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 23356 0.78 0.79679
Target:  5'- aACCCUUUAAUUCUAUGUuguuaaugcaguGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACG------------CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 107241 0.79 0.705084
Target:  5'- aACCCUUUAACUCUuaagGUGUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 39347 0.79 0.736677
Target:  5'- aACCCUUUAACUCUAcauUGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 90125 0.79 0.747018
Target:  5'- uACCCUUUAAUUCUAUauCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 169665 0.79 0.747018
Target:  5'- aACUUUUUAACUCUuaagGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 180956 0.79 0.705084
Target:  5'- uACCCUUUAAC-CCAUGCuGUUGUCAAc -3'
miRNA:   3'- -UGGGAAAUUGaGGUACG-CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 75832 0.8 0.672863
Target:  5'- aACCCUUUAACU-CAUGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 175020 0.8 0.672863
Target:  5'- aACCCUUUAACU-CAUGCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 49981 0.82 0.564499
Target:  5'- aACCCUUUAACUCCuaagGCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 86339 0.82 0.586012
Target:  5'- aAUCCUUUAAUUCCuaagGCGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 29523 0.83 0.532647
Target:  5'- uAUCCUUUAAUUCCAcgGUGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUa-CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 111169 0.83 0.501463
Target:  5'- aACCCUUUAACUCCuaAUGCGUUGUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 160949 0.84 0.481125
Target:  5'- uACCCUUUAACUCUAUGUaUCGUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 5043 0.86 0.395131
Target:  5'- aGCCCUUUAACUCCuaaaGCGUUGUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 95528 0.86 0.36875
Target:  5'- uACCCUUUAACUCCAcauCGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.