miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 36164 0.7 0.988748
Target:  5'- uACUCUUUAACUCUAcauUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 33153 0.7 0.990167
Target:  5'- aGCaCCUUUAACUCUAUauUGUCAUCGAc -3'
miRNA:   3'- -UG-GGAAAUUGAGGUAc-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 180750 0.7 0.990167
Target:  5'- aACCCcUUAAUUCCuaagGUGUUAUCAAc -3'
miRNA:   3'- -UGGGaAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 104233 0.7 0.990167
Target:  5'- uAUCCUUUAAUUCUAUGUaaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 106072 0.7 0.991441
Target:  5'- uAUCCUUUAACUUCAcacUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 24227 0.7 0.991441
Target:  5'- uACCCUUUAACUUUA--UGUCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 142100 0.7 0.992581
Target:  5'- aACCCUUUAAUcCCAcauUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGaGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 69241 0.7 0.992581
Target:  5'- uACUCUUUAAUUCCAUGUuaUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 20182 0.69 0.994497
Target:  5'- cACCCUUUAACUgCAcauUGUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAgGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 63216 0.69 0.994497
Target:  5'- cAUCCUUUAAUUCUAUauUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 11126 0.69 0.995065
Target:  5'- aACCCUUUAAaUCCAuguuguugaugcuuUGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUgAGGU--------------ACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 81926 0.69 0.995293
Target:  5'- uACCCUUUAACUCCGcaaCaUCAUUAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 1554 0.69 0.995293
Target:  5'- uACCCUUUAACUUCAcauCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 58325 0.69 0.995992
Target:  5'- uACagUUUAACUCCcaagGCGUUAUCAAUa -3'
miRNA:   3'- -UGggAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 63429 0.69 0.995992
Target:  5'- uACCUUUUAACUuuauguugcuaUCAaugcuuUGCGUCGUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGA-----------GGU------ACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 25118 0.69 0.996604
Target:  5'- uACCCUUUAACUCUAUGCu-------- -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcaguaguua -5'
28257 3' -47.8 NC_005902.1 + 63107 0.69 0.996604
Target:  5'- aACCCUUUAACUUUuaagGCaUCAUCAu- -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUua -5'
28257 3' -47.8 NC_005902.1 + 110167 0.68 0.997137
Target:  5'- uACCCUUUAAUUCCuaagGCaUUGUCAGa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 18695 0.68 0.997137
Target:  5'- uACCCUUUAAUUCCuaaaGCaUCAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 24050 0.68 0.997599
Target:  5'- uACCCUUUAAUUCUAcGaCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUaC-GcAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.