Results 101 - 120 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 90488 | 0.78 | 0.79679 |
Target: 5'- aACCCUUUAACUCUuaagGCaUCAUCGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 23356 | 0.78 | 0.79679 |
Target: 5'- aACCCUUUAAUUCUAUGUuguuaaugcaguGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUACG------------CAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 16803 | 0.78 | 0.791013 |
Target: 5'- aACCCUUUAACUCCuaaggcAUcauugaugacacaaaGCGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGG------UA---------------CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 169194 | 0.78 | 0.787129 |
Target: 5'- uACCUUUUAACUCUAUGuUGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 36022 | 0.78 | 0.7842 |
Target: 5'- gACCCUccaagauuaacuagUUAACUCCuaAUGUGUCAUCAAc -3' miRNA: 3'- -UGGGA--------------AAUUGAGG--UACGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 104142 | 0.78 | 0.767345 |
Target: 5'- cACCUUUUAACUCCAUGuUGUUAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 169665 | 0.79 | 0.747018 |
Target: 5'- aACUUUUUAACUCUuaagGCGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 90125 | 0.79 | 0.747018 |
Target: 5'- uACCCUUUAAUUCUAUauCGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 39347 | 0.79 | 0.736677 |
Target: 5'- aACCCUUUAACUCUAcauUGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 180956 | 0.79 | 0.705084 |
Target: 5'- uACCCUUUAAC-CCAUGCuGUUGUCAAc -3' miRNA: 3'- -UGGGAAAUUGaGGUACG-CAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 107241 | 0.79 | 0.705084 |
Target: 5'- aACCCUUUAACUCUuaagGUGUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 75832 | 0.8 | 0.672863 |
Target: 5'- aACCCUUUAACU-CAUGCaUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 175020 | 0.8 | 0.672863 |
Target: 5'- aACCCUUUAACU-CAUGCaUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 86339 | 0.82 | 0.586012 |
Target: 5'- aAUCCUUUAAUUCCuaagGCGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 49981 | 0.82 | 0.564499 |
Target: 5'- aACCCUUUAACUCCuaagGCaUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 29523 | 0.83 | 0.532647 |
Target: 5'- uAUCCUUUAAUUCCAcgGUGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUa-CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 111169 | 0.83 | 0.501463 |
Target: 5'- aACCCUUUAACUCCuaAUGCGUUGUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 160949 | 0.84 | 0.481125 |
Target: 5'- uACCCUUUAACUCUAUGUaUCGUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUACGcAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 5043 | 0.86 | 0.395131 |
Target: 5'- aGCCCUUUAACUCCuaaaGCGUUGUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 95528 | 0.86 | 0.36875 |
Target: 5'- uACCCUUUAACUCCAcauCGUCAUCGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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