Results 81 - 100 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 104233 | 0.7 | 0.990167 |
Target: 5'- uAUCCUUUAAUUCUAUGUaaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 106072 | 0.7 | 0.991441 |
Target: 5'- uAUCCUUUAACUUCAcacUGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 107241 | 0.79 | 0.705084 |
Target: 5'- aACCCUUUAACUCUuaagGUGUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 109654 | 0.72 | 0.973957 |
Target: 5'- aAUCCUUUAAUUCUAUGCuGUUAUUggUa -3' miRNA: 3'- -UGGGAAAUUGAGGUACG-CAGUAGuuA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 110135 | 0.72 | 0.973957 |
Target: 5'- uACUCUUUAAUUCCAUGUuaUUAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUACGc-AGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 110167 | 0.68 | 0.997137 |
Target: 5'- uACCCUUUAAUUCCuaagGCaUUGUCAGa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 110248 | 0.73 | 0.956996 |
Target: 5'- uACCCUUUAAUUCCAcaUGUCAUUAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUacGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 111169 | 0.83 | 0.501463 |
Target: 5'- aACCCUUUAACUCCuaAUGCGUUGUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 114319 | 0.76 | 0.875016 |
Target: 5'- uACCCUUUAAUUCCAcauCGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 116843 | 0.67 | 0.999082 |
Target: 5'- uACCCUUUAACUUCAUa--UCAUUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAcgcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 118574 | 0.67 | 0.998628 |
Target: 5'- aACCCUUUAACUUCuaagGCaUCAUUGAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 127399 | 0.66 | 0.999699 |
Target: 5'- aACUCUUUAACUCUuaaGaCGUCAUUGAc -3' miRNA: 3'- -UGGGAAAUUGAGGua-C-GCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 127676 | 1.07 | 0.025025 |
Target: 5'- aACCCUUUAACUCCAUGCGUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 127844 | 0.74 | 0.916544 |
Target: 5'- uACCCUUUAACUCUAcGCaUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUaCGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 130809 | 0.87 | 0.327534 |
Target: 5'- aACCCUUUAACUUCuaagGCGUCAUCGAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 131006 | 0.92 | 0.192011 |
Target: 5'- uACCCUUUAAUUCCAUGCuGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUACG-CAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 131129 | 0.71 | 0.98353 |
Target: 5'- aACCCUUUAAUUCCGcauUGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 134640 | 0.76 | 0.842372 |
Target: 5'- aACCCUUUAAUUCCuaAUGUGUUGUUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 136636 | 0.77 | 0.833651 |
Target: 5'- uAUCCUUUAACUUCAUGCaUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 136728 | 0.75 | 0.903747 |
Target: 5'- uAUUCUUUAACUCCAUGuUGUCAUUGAc -3' miRNA: 3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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