Results 101 - 120 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 137492 | 0.68 | 0.998337 |
Target: 5'- uACUCUUUAACUCUAUaCaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUAcGcAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 137556 | 0.67 | 0.999082 |
Target: 5'- aACUUaUUAACUCCAcGCuGUUAUCAAUa -3' miRNA: 3'- -UGGGaAAUUGAGGUaCG-CAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 137832 | 0.88 | 0.304489 |
Target: 5'- aAUCCUUUAGCUCCuaagGCGUCAUCGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 139814 | 0.74 | 0.92254 |
Target: 5'- uACCUUUUAACUCCAUGU--UGUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUACGcaGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 140991 | 0.72 | 0.973957 |
Target: 5'- cACCCUUUAACUCCAcaCaUUAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUacGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 142100 | 0.7 | 0.992581 |
Target: 5'- aACCCUUUAAUcCCAcauUGUCAUCGAUg -3' miRNA: 3'- -UGGGAAAUUGaGGUac-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 146848 | 0.7 | 0.987176 |
Target: 5'- aACCUUUUAACUCCAuauugaugaUGCuuuGUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGU---------ACG---CAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 152759 | 0.72 | 0.971035 |
Target: 5'- aAUCCUUUAACUCUAUauUGUCAUCGAc -3' miRNA: 3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 154654 | 0.66 | 0.999816 |
Target: 5'- uACCCUUUAACUUUuaagGCaUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 156461 | 0.72 | 0.971035 |
Target: 5'- uAUCCUUUAAUUUCAUGCaUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 157916 | 1.02 | 0.04881 |
Target: 5'- uACCCUUUAACUCCAUGUGUCAUCGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 160818 | 0.77 | 0.833651 |
Target: 5'- uACCUUUUAACUCaagGCGUUGUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGguaCGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 160949 | 0.84 | 0.481125 |
Target: 5'- uACCCUUUAACUCUAUGUaUCGUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUACGcAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 161772 | 0.66 | 0.99952 |
Target: 5'- aAUCCUUUAACaCCuaagGUGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGaGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 165878 | 0.77 | 0.806283 |
Target: 5'- aACCCUUUAACUUCuaagGUGUCAUUAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 166073 | 0.68 | 0.997599 |
Target: 5'- aACCCUUUAACUUCuaaGaUGUCAUUAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua-C-GCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 167094 | 0.67 | 0.998874 |
Target: 5'- -aCCUUUAAC-CCAaaUGUGUCAUUGAc -3' miRNA: 3'- ugGGAAAUUGaGGU--ACGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 167374 | 0.67 | 0.999256 |
Target: 5'- uACCCUUUAACUCUacacuguugccaGUGaCGUagCAUCAu- -3' miRNA: 3'- -UGGGAAAUUGAGG------------UAC-GCA--GUAGUua -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 169194 | 0.78 | 0.787129 |
Target: 5'- uACCUUUUAACUCUAUGuUGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 169665 | 0.79 | 0.747018 |
Target: 5'- aACUUUUUAACUCUuaagGCGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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