Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28257 | 3' | -47.8 | NC_005902.1 | + | 170069 | 0.67 | 0.998628 |
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Target: 5'- uAUCCUUUAACUCCA--CaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUacGcAGUAGUUa -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 173196 | 0.71 | 0.978909 |
|
Target: 5'- uAUCCUUUAACUCCAcaUcaucaaugacaaaGCGUCAUUGAUa -3' miRNA: 3'- -UGGGAAAUUGAGGU--A-------------CGCAGUAGUUA- -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 174577 | 0.77 | 0.806283 |
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Target: 5'- uACCuUUUUAACUCCAgGCGUUAUCAAc -3' miRNA: 3'- -UGG-GAAAUUGAGGUaCGCAGUAGUUa -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 174663 | 0.73 | 0.948477 |
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Target: 5'- uACCCUUUAAUUCCAUauUGUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUa -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 175020 | 0.8 | 0.672863 |
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Target: 5'- aACCCUUUAACU-CAUGCaUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 175937 | 0.77 | 0.824723 |
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Target: 5'- aACCCUUUAACUCCuaagGUaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 180750 | 0.7 | 0.990167 |
|
Target: 5'- aACCCcUUAAUUCCuaagGUGUUAUCAAc -3' miRNA: 3'- -UGGGaAAUUGAGGua--CGCAGUAGUUa -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 180956 | 0.79 | 0.705084 |
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Target: 5'- uACCCUUUAAC-CCAUGCuGUUGUCAAc -3' miRNA: 3'- -UGGGAAAUUGaGGUACG-CAGUAGUUa -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 184443 | 0.75 | 0.903747 |
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Target: 5'- aACCCUUUAACUCUuaagGUGUUGUUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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