miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 88763 0.66 0.999816
Target:  5'- aACCCUUUAAUUCUAUauUGUCAaCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUaGUUA- -5'
28257 3' -47.8 NC_005902.1 + 86339 0.82 0.586012
Target:  5'- aAUCCUUUAAUUCCuaagGCGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 85120 0.93 0.154882
Target:  5'- uACCCUUauuaAACUCCAUGCGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAa---UUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 82184 0.75 0.910279
Target:  5'- uAUCCUUUAACUCCAUauUGUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 81926 0.69 0.995293
Target:  5'- uACCCUUUAACUCCGcaaCaUCAUUAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 81854 0.77 0.833651
Target:  5'- aACUCUUUAACUCCuaagGCGUUAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 79927 0.71 0.979149
Target:  5'- aACUCUUUAACUCCuaagGCaUCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 78150 0.66 0.999816
Target:  5'- cAUCCUUUAACUUUAcacUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 76344 0.66 0.999764
Target:  5'- uACUCUUUAACUCCAcaUGa-UCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGU--ACgcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 76022 0.74 0.916544
Target:  5'- aACCCUUUAACUCCuaagGUaUUAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 75832 0.8 0.672863
Target:  5'- aACCCUUUAACU-CAUGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 73719 0.67 0.998628
Target:  5'- uACCCUUUAACUCUAcacUGUUAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 72467 0.67 0.999256
Target:  5'- uAUCCUUUGAUUCCAUGuUGUUAaUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUaGUUA- -5'
28257 3' -47.8 NC_005902.1 + 71258 0.72 0.971035
Target:  5'- uACCCUUUAACUCUAcauCGUCAcCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUaGUUA- -5'
28257 3' -47.8 NC_005902.1 + 69241 0.7 0.992581
Target:  5'- uACUCUUUAAUUCCAUGUuaUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 68236 0.71 0.98353
Target:  5'- aACCCUUUAACUCU--GCaUCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGuaCGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 67979 0.66 0.99952
Target:  5'- aAUCCUUUAAUUCCuaaaGUaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 67820 0.67 0.998628
Target:  5'- aACCUUUUAACUCCuaaaGCaUUGUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 67778 0.73 0.948477
Target:  5'- uAUCCUUUAACUCUAcacUGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 67423 0.73 0.952866
Target:  5'- uAUCCUUUAACUCUAUacUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.