miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 67190 0.71 0.976659
Target:  5'- uACCCUUUAACUCCuaa-GgCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGuacgCaGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 67062 0.73 0.960873
Target:  5'- uACCCUUUAACUCCAcauuaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUacgc-AGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 63429 0.69 0.995992
Target:  5'- uACCUUUUAACUuuauguugcuaUCAaugcuuUGCGUCGUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGA-----------GGU------ACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 63216 0.69 0.994497
Target:  5'- cAUCCUUUAAUUCUAUauUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 63166 0.75 0.889894
Target:  5'- aACCCUUUAAUUCCuaagGCaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 63107 0.69 0.996604
Target:  5'- aACCCUUUAACUUUuaagGCaUCAUCAu- -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUua -5'
28257 3' -47.8 NC_005902.1 + 58600 0.74 0.916544
Target:  5'- uACCCUUUAACUCUAcGCaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUaCGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 58325 0.69 0.995992
Target:  5'- uACagUUUAACUCCcaagGCGUUAUCAAUa -3'
miRNA:   3'- -UGggAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 54990 0.67 0.998874
Target:  5'- aACCCUUUAACcCCuaagGCaUCAUUAAUa -3'
miRNA:   3'- -UGGGAAAUUGaGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 52840 0.72 0.967886
Target:  5'- uAUCCUUUAACUCCAUacCGUUGUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 50527 0.67 0.999256
Target:  5'- uACCCUUUAACucuUCCAUGCa-CAgCAAUa -3'
miRNA:   3'- -UGGGAAAUUG---AGGUACGcaGUaGUUA- -5'
28257 3' -47.8 NC_005902.1 + 49981 0.82 0.564499
Target:  5'- aACCCUUUAACUCCuaagGCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 48403 0.7 0.988748
Target:  5'- aACCCUUUAACUCCuaaaGUaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 48318 0.67 0.999082
Target:  5'- uACCCUUUAAUUCCuuuaugCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGuacgcaGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 48163 0.72 0.967886
Target:  5'- aACCCUUUAACUCCuaaaGUaUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 48072 0.73 0.956996
Target:  5'- aACCCUUUAAUUCCuaagGCaUCAUUAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 46188 0.75 0.910279
Target:  5'- aACCCc-UAACUCaugGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGaaAUUGAGguaCGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 42296 0.87 0.351845
Target:  5'- uACCUUUUAAUUCUAUGUGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 40733 0.76 0.859158
Target:  5'- uACCCuUUUAACUCCAUGCuaUUGUCAAUg -3'
miRNA:   3'- -UGGG-AAAUUGAGGUACGc-AGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 39347 0.79 0.736677
Target:  5'- aACCCUUUAACUCUAcauUGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.