miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 37317 0.95 0.131435
Target:  5'- uACCCUUUAACUCCAUGuUGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 36164 0.7 0.988748
Target:  5'- uACUCUUUAACUCUAcauUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 36022 0.78 0.7842
Target:  5'- gACCCUccaagauuaacuagUUAACUCCuaAUGUGUCAUCAAc -3'
miRNA:   3'- -UGGGA--------------AAUUGAGG--UACGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 33153 0.7 0.990167
Target:  5'- aGCaCCUUUAACUCUAUauUGUCAUCGAc -3'
miRNA:   3'- -UG-GGAAAUUGAGGUAc-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 31346 0.68 0.997599
Target:  5'- -gCCUUUAACUCCAaaCaUCAUCAAUa -3'
miRNA:   3'- ugGGAAAUUGAGGUacGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 31155 0.66 0.999816
Target:  5'- uACCCUUUAACUCCucuacAUGCugacaacaCAUUAGUg -3'
miRNA:   3'- -UGGGAAAUUGAGG-----UACGca------GUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 29537 0.73 0.956996
Target:  5'- aAUCCUUUAACUCUuaagGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 29523 0.83 0.532647
Target:  5'- uAUCCUUUAAUUCCAcgGUGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUa-CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 28081 0.72 0.971035
Target:  5'- aACCCUUUAAUUCCuaaaGUaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 26428 0.67 0.9994
Target:  5'- aACCCUUUAAUUUCuaagGCaUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 25118 0.69 0.996604
Target:  5'- uACCCUUUAACUCUAUGCu-------- -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcaguaguua -5'
28257 3' -47.8 NC_005902.1 + 25068 0.73 0.948477
Target:  5'- cCCCUUUAACUCCuaaaGCGUUGUUGAc -3'
miRNA:   3'- uGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 24227 0.7 0.991441
Target:  5'- uACCCUUUAACUUUA--UGUCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 24050 0.68 0.997599
Target:  5'- uACCCUUUAAUUCUAcGaCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUaC-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 23356 0.78 0.79679
Target:  5'- aACCCUUUAAUUCUAUGUuguuaaugcaguGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACG------------CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 20182 0.69 0.994497
Target:  5'- cACCCUUUAACUgCAcauUGUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAgGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 18695 0.68 0.997137
Target:  5'- uACCCUUUAAUUCCuaaaGCaUCAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 16803 0.78 0.791013
Target:  5'- aACCCUUUAACUCCuaaggcAUcauugaugacacaaaGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG------UA---------------CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 16112 0.73 0.943825
Target:  5'- aACCCUUUAACcCCAaacaCGUCGUCGGUg -3'
miRNA:   3'- -UGGGAAAUUGaGGUac--GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 15221 0.66 0.999764
Target:  5'- uACCUUUUAACUC---GUGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGguaCGCAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.