miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 75832 0.8 0.672863
Target:  5'- aACCCUUUAACU-CAUGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 131006 0.92 0.192011
Target:  5'- uACCCUUUAAUUCCAUGCuGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACG-CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 137832 0.88 0.304489
Target:  5'- aAUCCUUUAGCUCCuaagGCGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 86339 0.82 0.586012
Target:  5'- aAUCCUUUAAUUCCuaagGCGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 5043 0.86 0.395131
Target:  5'- aGCCCUUUAACUCCuaaaGCGUUGUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 111169 0.83 0.501463
Target:  5'- aACCCUUUAACUCCuaAUGCGUUGUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 94950 0.76 0.859158
Target:  5'- uACCCUUUAACUCCAcaCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 28081 0.72 0.971035
Target:  5'- aACCCUUUAAUUCCuaaaGUaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 29537 0.73 0.956996
Target:  5'- aAUCCUUUAACUCUuaagGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 110248 0.73 0.956996
Target:  5'- uACCCUUUAAUUCCAcaUGUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 5245 0.73 0.952866
Target:  5'- uUgCUUUAacaACUUCAUGUGUCAUCAAUg -3'
miRNA:   3'- uGgGAAAU---UGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 16112 0.73 0.943825
Target:  5'- aACCCUUUAACcCCAaacaCGUCGUCGGUg -3'
miRNA:   3'- -UGGGAAAUUGaGGUac--GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 76022 0.74 0.916544
Target:  5'- aACCCUUUAACUCCuaagGUaUUAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 127844 0.74 0.916544
Target:  5'- uACCCUUUAACUCUAcGCaUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUaCGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 46188 0.75 0.910279
Target:  5'- aACCCc-UAACUCaugGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGaaAUUGAGguaCGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 63166 0.75 0.889894
Target:  5'- aACCCUUUAAUUCCuaagGCaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 89960 0.75 0.882581
Target:  5'- aACCCUUUAACUCCuaagGCaUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 114319 0.76 0.875016
Target:  5'- uACCCUUUAAUUCCAcauCGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 4897 0.76 0.862405
Target:  5'- aACCCUUUAACUCUcaaagcauuacagugAUauaaaGCGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGG---------------UA-----CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 134640 0.76 0.842372
Target:  5'- aACCCUUUAAUUCCuaAUGUGUUGUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.