Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28257 | 3' | -47.8 | NC_005902.1 | + | 46188 | 0.75 | 0.910279 |
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Target: 5'- aACCCc-UAACUCaugGCGUCAUCAAUg -3' miRNA: 3'- -UGGGaaAUUGAGguaCGCAGUAGUUA- -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 63166 | 0.75 | 0.889894 |
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Target: 5'- aACCCUUUAAUUCCuaagGCaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 89960 | 0.75 | 0.882581 |
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Target: 5'- aACCCUUUAACUCCuaagGCaUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 114319 | 0.76 | 0.875016 |
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Target: 5'- uACCCUUUAAUUCCAcauCGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 4897 | 0.76 | 0.862405 |
|
Target: 5'- aACCCUUUAACUCUcaaagcauuacagugAUauaaaGCGUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGG---------------UA-----CGCAGUAGUUA- -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 94950 | 0.76 | 0.859158 |
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Target: 5'- uACCCUUUAACUCCAcaCaUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGUacGcAGUAGUUA- -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 134640 | 0.76 | 0.842372 |
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Target: 5'- aACCCUUUAAUUCCuaAUGUGUUGUUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 10059 | 0.77 | 0.833651 |
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Target: 5'- aACCCUUUAACUCUgcGCuGUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGuaCG-CAGUAGUUa -5' |
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| 28257 | 3' | -47.8 | NC_005902.1 | + | 127676 | 1.07 | 0.025025 |
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Target: 5'- aACCCUUUAACUCCAUGCGUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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