Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 103831 | 0.7 | 0.988748 |
Target: 5'- aACCCUUUAACUUUcaaaGUGUCAUUGAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 36164 | 0.7 | 0.988748 |
Target: 5'- uACUCUUUAACUCUAcauUGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 146848 | 0.7 | 0.987176 |
Target: 5'- aACCUUUUAACUCCAuauugaugaUGCuuuGUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGU---------ACG---CAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 102204 | 0.7 | 0.987176 |
Target: 5'- aACCCUUUAACUCCuaaGauaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua-Cgc-AGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 180956 | 0.79 | 0.705084 |
Target: 5'- uACCCUUUAAC-CCAUGCuGUUGUCAAc -3' miRNA: 3'- -UGGGAAAUUGaGGUACG-CAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 169665 | 0.79 | 0.747018 |
Target: 5'- aACUUUUUAACUCUuaagGCGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 16803 | 0.78 | 0.791013 |
Target: 5'- aACCCUUUAACUCCuaaggcAUcauugaugacacaaaGCGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGG------UA---------------CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 23356 | 0.78 | 0.79679 |
Target: 5'- aACCCUUUAAUUCUAUGUuguuaaugcaguGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUACG------------CAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 90488 | 0.78 | 0.79679 |
Target: 5'- aACCCUUUAACUCUuaagGCaUCAUCGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 165878 | 0.77 | 0.806283 |
Target: 5'- aACCCUUUAACUUCuaagGUGUCAUUAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 175937 | 0.77 | 0.824723 |
Target: 5'- aACCCUUUAACUCCuaagGUaUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 175020 | 0.8 | 0.672863 |
Target: 5'- aACCCUUUAACU-CAUGCaUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAgGUACGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 49981 | 0.82 | 0.564499 |
Target: 5'- aACCCUUUAACUCCuaagGCaUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 29523 | 0.83 | 0.532647 |
Target: 5'- uAUCCUUUAAUUCCAcgGUGUCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUa-CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 42296 | 0.87 | 0.351845 |
Target: 5'- uACCUUUUAAUUCUAUGUGUCAUCGAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUACGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 130809 | 0.87 | 0.327534 |
Target: 5'- aACCCUUUAACUUCuaagGCGUCAUCGAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 10458 | 0.88 | 0.31203 |
Target: 5'- uACUCUUUAGCUCCAUGCaUCAUCGAUa -3' miRNA: 3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 85120 | 0.93 | 0.154882 |
Target: 5'- uACCCUUauuaAACUCCAUGCGUCAUCAAUa -3' miRNA: 3'- -UGGGAAa---UUGAGGUACGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 37317 | 0.95 | 0.131435 |
Target: 5'- uACCCUUUAACUCCAUGuUGUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 78150 | 0.66 | 0.999816 |
Target: 5'- cAUCCUUUAACUUUAcacUGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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