miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 1554 0.69 0.995293
Target:  5'- uACCCUUUAACUUCAcauCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 4541 0.66 0.999619
Target:  5'- uACCCUUUAACUUCuaaaGCaUUGUCGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 4897 0.76 0.862405
Target:  5'- aACCCUUUAACUCUcaaagcauuacagugAUauaaaGCGUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGG---------------UA-----CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 5043 0.86 0.395131
Target:  5'- aGCCCUUUAACUCCuaaaGCGUUGUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 5245 0.73 0.952866
Target:  5'- uUgCUUUAacaACUUCAUGUGUCAUCAAUg -3'
miRNA:   3'- uGgGAAAU---UGAGGUACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 5310 0.67 0.9994
Target:  5'- aAUuuUUUAACUUCuaagGUGUCGUCAAUg -3'
miRNA:   3'- -UGggAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 10059 0.77 0.833651
Target:  5'- aACCCUUUAACUCUgcGCuGUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGuaCG-CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 10458 0.88 0.31203
Target:  5'- uACUCUUUAGCUCCAUGCaUCAUCGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 11126 0.69 0.995065
Target:  5'- aACCCUUUAAaUCCAuguuguugaugcuuUGCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUgAGGU--------------ACGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 15221 0.66 0.999764
Target:  5'- uACCUUUUAACUC---GUGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGguaCGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 16112 0.73 0.943825
Target:  5'- aACCCUUUAACcCCAaacaCGUCGUCGGUg -3'
miRNA:   3'- -UGGGAAAUUGaGGUac--GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 16803 0.78 0.791013
Target:  5'- aACCCUUUAACUCCuaaggcAUcauugaugacacaaaGCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG------UA---------------CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 18695 0.68 0.997137
Target:  5'- uACCCUUUAAUUCCuaaaGCaUCAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 20182 0.69 0.994497
Target:  5'- cACCCUUUAACUgCAcauUGUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAgGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 23356 0.78 0.79679
Target:  5'- aACCCUUUAAUUCUAUGUuguuaaugcaguGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACG------------CAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 24050 0.68 0.997599
Target:  5'- uACCCUUUAAUUCUAcGaCaUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUaC-GcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 24227 0.7 0.991441
Target:  5'- uACCCUUUAACUUUA--UGUCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 25068 0.73 0.948477
Target:  5'- cCCCUUUAACUCCuaaaGCGUUGUUGAc -3'
miRNA:   3'- uGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 25118 0.69 0.996604
Target:  5'- uACCCUUUAACUCUAUGCu-------- -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGcaguaguua -5'
28257 3' -47.8 NC_005902.1 + 26428 0.67 0.9994
Target:  5'- aACCCUUUAAUUUCuaagGCaUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.