miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 5' -44.3 NC_005902.1 + 10097 0.73 0.993159
Target:  5'- aUUGUUGAUGAUaCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGcGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 11214 0.73 0.993159
Target:  5'- -cAUUGAUGAUGCCUUaaGAGUUAAGg -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 11459 0.85 0.657354
Target:  5'- aUUGUUGAUAACGCCU--GGAGUUAAAa -3'
miRNA:   3'- -AAUAACUAUUGCGGAacCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 16091 0.66 0.999999
Target:  5'- -cAUUGuuaauaAUGAUGCCUUaGGAGUUAAu -3'
miRNA:   3'- aaUAAC------UAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 16371 0.78 0.926692
Target:  5'- -cAUUGAUGACGCCUUaaGAGUUAAAa -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 18829 0.66 0.999998
Target:  5'- aUGUUGuaaacAAUGCCUUaGGAGUUAAc -3'
miRNA:   3'- aAUAACua---UUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 20197 0.66 0.999999
Target:  5'- -cAUUGuuaucaAUGAUGCCUUaGGAGUUAAc -3'
miRNA:   3'- aaUAAC------UAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 25220 0.67 0.999996
Target:  5'- -cAUUGAcAACGCCUU--GAGUUAAAa -3'
miRNA:   3'- aaUAACUaUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 27640 0.76 0.964634
Target:  5'- ----cGAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 31381 0.68 0.999945
Target:  5'- aUUGUUGAUAAUGCCUUaaaAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcccUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 36343 0.66 0.999999
Target:  5'- gUAUUGAcgaUAACcCCUUaGGAGUUAAGg -3'
miRNA:   3'- aAUAACU---AUUGcGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 37360 0.76 0.964634
Target:  5'- ----cGAUGAUGCCUUaGGAGUUAAAa -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 48207 0.71 0.99908
Target:  5'- ----cGAUGACGCCUUaGGAGcUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCaAUUU- -5'
28257 5' -44.3 NC_005902.1 + 51763 0.72 0.996437
Target:  5'- aUUGUUaAUAAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 55225 0.66 0.999999
Target:  5'- gUUAUcGAUGACGCCUUaGaAGUUAAAg -3'
miRNA:   3'- -AAUAaCUAUUGCGGAAcCcUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 58362 0.75 0.979708
Target:  5'- gUAUUGAUGACGCau--GGAGUUAAAg -3'
miRNA:   3'- aAUAACUAUUGCGgaacCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 61554 0.74 0.989384
Target:  5'- -cGUUGAcAAUGCCUuaggagUGGGGGUUAAGu -3'
miRNA:   3'- aaUAACUaUUGCGGA------ACCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 71302 0.8 0.853579
Target:  5'- -----aAUGAUGCCUUGGGAGUUAGGg -3'
miRNA:   3'- aauaacUAUUGCGGAACCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 78794 0.67 0.999989
Target:  5'- aUUGUUGAUAACaCCUUaaGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGcGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 83831 0.68 0.999979
Target:  5'- aUGUUGAUGAUaUCUUaGGAGUUAAAg -3'
miRNA:   3'- aAUAACUAUUGcGGAAcCCUCAAUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.