Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28257 | 5' | -44.3 | NC_005902.1 | + | 10097 | 0.73 | 0.993159 |
Target: 5'- aUUGUUGAUGAUaCCUUaGGAGUUAAAg -3' miRNA: 3'- -AAUAACUAUUGcGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 11214 | 0.73 | 0.993159 |
Target: 5'- -cAUUGAUGAUGCCUUaaGAGUUAAGg -3' miRNA: 3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 11459 | 0.85 | 0.657354 |
Target: 5'- aUUGUUGAUAACGCCU--GGAGUUAAAa -3' miRNA: 3'- -AAUAACUAUUGCGGAacCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 16091 | 0.66 | 0.999999 |
Target: 5'- -cAUUGuuaauaAUGAUGCCUUaGGAGUUAAu -3' miRNA: 3'- aaUAAC------UAUUGCGGAAcCCUCAAUUu -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 16371 | 0.78 | 0.926692 |
Target: 5'- -cAUUGAUGACGCCUUaaGAGUUAAAa -3' miRNA: 3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 18829 | 0.66 | 0.999998 |
Target: 5'- aUGUUGuaaacAAUGCCUUaGGAGUUAAc -3' miRNA: 3'- aAUAACua---UUGCGGAAcCCUCAAUUu -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 20197 | 0.66 | 0.999999 |
Target: 5'- -cAUUGuuaucaAUGAUGCCUUaGGAGUUAAc -3' miRNA: 3'- aaUAAC------UAUUGCGGAAcCCUCAAUUu -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 25220 | 0.67 | 0.999996 |
Target: 5'- -cAUUGAcAACGCCUU--GAGUUAAAa -3' miRNA: 3'- aaUAACUaUUGCGGAAccCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 27640 | 0.76 | 0.964634 |
Target: 5'- ----cGAUGAUGCCUUaGGAGUUAAAg -3' miRNA: 3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 31381 | 0.68 | 0.999945 |
Target: 5'- aUUGUUGAUAAUGCCUUaaaAGUUAAAg -3' miRNA: 3'- -AAUAACUAUUGCGGAAcccUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 36343 | 0.66 | 0.999999 |
Target: 5'- gUAUUGAcgaUAACcCCUUaGGAGUUAAGg -3' miRNA: 3'- aAUAACU---AUUGcGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 37360 | 0.76 | 0.964634 |
Target: 5'- ----cGAUGAUGCCUUaGGAGUUAAAa -3' miRNA: 3'- aauaaCUAUUGCGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 48207 | 0.71 | 0.99908 |
Target: 5'- ----cGAUGACGCCUUaGGAGcUAAAg -3' miRNA: 3'- aauaaCUAUUGCGGAAcCCUCaAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 51763 | 0.72 | 0.996437 |
Target: 5'- aUUGUUaAUAAUGCCUUaGGAGUUAAAg -3' miRNA: 3'- -AAUAAcUAUUGCGGAAcCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 55225 | 0.66 | 0.999999 |
Target: 5'- gUUAUcGAUGACGCCUUaGaAGUUAAAg -3' miRNA: 3'- -AAUAaCUAUUGCGGAAcCcUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 58362 | 0.75 | 0.979708 |
Target: 5'- gUAUUGAUGACGCau--GGAGUUAAAg -3' miRNA: 3'- aAUAACUAUUGCGgaacCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 61554 | 0.74 | 0.989384 |
Target: 5'- -cGUUGAcAAUGCCUuaggagUGGGGGUUAAGu -3' miRNA: 3'- aaUAACUaUUGCGGA------ACCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 71302 | 0.8 | 0.853579 |
Target: 5'- -----aAUGAUGCCUUGGGAGUUAGGg -3' miRNA: 3'- aauaacUAUUGCGGAACCCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 78794 | 0.67 | 0.999989 |
Target: 5'- aUUGUUGAUAACaCCUUaaGAGUUAAAg -3' miRNA: 3'- -AAUAACUAUUGcGGAAccCUCAAUUU- -5' |
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28257 | 5' | -44.3 | NC_005902.1 | + | 83831 | 0.68 | 0.999979 |
Target: 5'- aUGUUGAUGAUaUCUUaGGAGUUAAAg -3' miRNA: 3'- aAUAACUAUUGcGGAAcCCUCAAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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