miRNA display CGI


Results 21 - 40 of 58 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 5' -44.3 NC_005902.1 + 107462 0.68 0.99997
Target:  5'- -cGUUGAUGAUGUCUUaaGAGUUAAGa -3'
miRNA:   3'- aaUAACUAUUGCGGAAccCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 31381 0.68 0.999945
Target:  5'- aUUGUUGAUAAUGCCUUaaaAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcccUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 85809 0.69 0.999926
Target:  5'- -cAUUGuaAUAAUGCUUUGGG-GUUAAAg -3'
miRNA:   3'- aaUAAC--UAUUGCGGAACCCuCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 142076 0.69 0.999901
Target:  5'- gUUAUUGAUGAUGCCUUcGaAGUUAAc -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCcUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 154692 0.69 0.999901
Target:  5'- gUUAUUGAUGAUGUUU--GGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAacCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 174701 0.69 0.999869
Target:  5'- gUUAUUGAUGAUGUCUUaaGAGUUAAu -3'
miRNA:   3'- -AAUAACUAUUGCGGAAccCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 167524 0.69 0.999869
Target:  5'- -cAUUaAUAAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 172697 0.69 0.999829
Target:  5'- gUGUUGucaAUGAUGCCUUaGGGGUUAAc -3'
miRNA:   3'- aAUAAC---UAUUGCGGAAcCCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 106109 0.69 0.999829
Target:  5'- -cAUUaAUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 104301 0.69 0.999829
Target:  5'- -cAUUGAUGACGgUgugaggugGGGGGUUAAAg -3'
miRNA:   3'- aaUAACUAUUGCgGaa------CCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 131044 0.7 0.99941
Target:  5'- gUUAUUaAUGAUGCCUUaGGGGUUAAAg -3'
miRNA:   3'- -AAUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 118843 0.71 0.99908
Target:  5'- -cAUUGuuauUGAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAACu---AUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 48207 0.71 0.99908
Target:  5'- ----cGAUGACGCCUUaGGAGcUAAAg -3'
miRNA:   3'- aauaaCUAUUGCGGAAcCCUCaAUUU- -5'
28257 5' -44.3 NC_005902.1 + 104186 0.71 0.998863
Target:  5'- -----aAUAACGCCUUaGGAGUUAAAg -3'
miRNA:   3'- aauaacUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 110287 0.72 0.997934
Target:  5'- -cAUUGAUggUGCUUUaGGAGUUAAGa -3'
miRNA:   3'- aaUAACUAuuGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 180993 0.72 0.997934
Target:  5'- -cAUUGAcAACGCUUUaGGAGUUAAAg -3'
miRNA:   3'- aaUAACUaUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 139851 0.72 0.997509
Target:  5'- -cAUUGAUGACGCCaUGaguuaGGGGUUAAc -3'
miRNA:   3'- aaUAACUAUUGCGGaAC-----CCUCAAUUu -5'
28257 5' -44.3 NC_005902.1 + 51763 0.72 0.996437
Target:  5'- aUUGUUaAUAAUGCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAAcUAUUGCGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 110012 0.73 0.994145
Target:  5'- aUUAUUGAUAAUaCCUUaGGAGUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGcGGAAcCCUCAAUUU- -5'
28257 5' -44.3 NC_005902.1 + 122868 0.73 0.994145
Target:  5'- aUUGUUGAUGAUGCCUUaGGAaUUAAAg -3'
miRNA:   3'- -AAUAACUAUUGCGGAAcCCUcAAUUU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.