miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 3' -45.6 NC_005902.1 + 162755 0.66 0.999989
Target:  5'- cUUUAACAUUUaAGCUAUAUGCaaGUGu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUACGagUAC- -5'
28258 3' -45.6 NC_005902.1 + 47186 0.66 0.999984
Target:  5'- cUUUAACACUUaAGCUAUAUaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 109919 0.66 0.999989
Target:  5'- cUUUAAgACCUaAGCUAUAUGCaaaCAUa -3'
miRNA:   3'- -AAAUUgUGGAcUCGAUAUACGa--GUAc -5'
28258 3' -45.6 NC_005902.1 + 128775 0.66 0.99997
Target:  5'- cUUUAACACCUaAGCUAUAUaCUUGUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 50115 0.66 0.999989
Target:  5'- -cUAACACCUaAGCUAcauacuuacUGUGCUUGUu -3'
miRNA:   3'- aaAUUGUGGAcUCGAU---------AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 156790 0.66 0.99997
Target:  5'- -cUAACACCUaAGCUAUAUaCUUAUu -3'
miRNA:   3'- aaAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 42241 0.66 0.99999
Target:  5'- cUUAACACCUaAGCUAUAUacaaaugaguauauaGCUUAg- -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUA---------------CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 116674 0.66 0.999989
Target:  5'- uUUUAACACCUGaAGCUuAUAUaGUUUAg- -3'
miRNA:   3'- -AAAUUGUGGAC-UCGA-UAUA-CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 118296 0.66 0.999978
Target:  5'- uUUUAACACUUaAGCUAUAUaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 105267 0.66 0.999989
Target:  5'- cUUUAACACCUaAGCUAUAUacccaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAc----GAGUac -5'
28258 3' -45.6 NC_005902.1 + 22618 0.66 0.999989
Target:  5'- gUUAACACCUaAGCUAUAUauuuaCUCAc- -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUAc----GAGUac -5'
28258 3' -45.6 NC_005902.1 + 15310 0.66 0.999989
Target:  5'- aUUAACACCUGAauuaUAUAUGCaauuauUCAUa -3'
miRNA:   3'- aAAUUGUGGACUcg--AUAUACG------AGUAc -5'
28258 3' -45.6 NC_005902.1 + 156551 0.67 0.999898
Target:  5'- uUUUAACACCUaAGCUAuauauuuacucacUAUGCUUGUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU-------------AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 99623 0.67 0.999944
Target:  5'- aUUAACAUUUaAGCUGUAuaUGCUCAc- -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAU--ACGAGUac -5'
28258 3' -45.6 NC_005902.1 + 23259 0.67 0.999901
Target:  5'- cUUUAACACCUaAGCUAUAUaUUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 45081 0.67 0.999898
Target:  5'- uUUUAACACCUaAGCUAuauacuuacuugcUAUGCUUGUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU-------------AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 166130 0.67 0.999869
Target:  5'- cUUUAAUACUUaAGCUAUAuacaUGCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU----ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 140870 0.67 0.999944
Target:  5'- cUUUAACAUCUaAGCUGUAUaCUCAa- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 111232 0.67 0.999869
Target:  5'- uUUUAACACCUaAGCUAUAUauacaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAc----GAGUAc -5'
28258 3' -45.6 NC_005902.1 + 167158 0.68 0.999829
Target:  5'- cUUUAACACCUaAGCUAUAUaCUUAa- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.