miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 3' -45.6 NC_005902.1 + 3024 0.68 0.999779
Target:  5'- aUUAACAUCUaAGCUAUAUaCUCAUu -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 3077 0.72 0.993397
Target:  5'- aUUUAACACCUaAGCUAUAuauacacuUGUUCAUa -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU--------ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 11409 0.68 0.999628
Target:  5'- cUUUAACACUUaAGCUAUauacuuguuugcuGUGCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUA-------------UACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 13185 0.68 0.999825
Target:  5'- cUUUAACACCUaAGCUAUAuacccauuugcgaUGCUUAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU-------------ACGAGUac -5'
28258 3' -45.6 NC_005902.1 + 15310 0.66 0.999989
Target:  5'- aUUAACACCUGAauuaUAUAUGCaauuauUCAUa -3'
miRNA:   3'- aAAUUGUGGACUcg--AUAUACG------AGUAc -5'
28258 3' -45.6 NC_005902.1 + 16519 0.76 0.940274
Target:  5'- -gUAACACCUGAGaUAUAUaGCUCAg- -3'
miRNA:   3'- aaAUUGUGGACUCgAUAUA-CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 18859 0.72 0.993397
Target:  5'- uUUUAACACCUaAGCUAUAUacGCUUAa- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUA--CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 22618 0.66 0.999989
Target:  5'- gUUAACACCUaAGCUAUAUauuuaCUCAc- -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUAc----GAGUac -5'
28258 3' -45.6 NC_005902.1 + 23259 0.67 0.999901
Target:  5'- cUUUAACACCUaAGCUAUAUaUUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 34817 0.68 0.999715
Target:  5'- cUUUAACACCUaAGUUAUAUaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 37771 0.71 0.994345
Target:  5'- uUUUAACACCUaAGCUugcUAUGCUUAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAu--AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 41984 0.72 0.991122
Target:  5'- gUUUAACACCUaAGCUAUAUaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 42241 0.66 0.99999
Target:  5'- cUUAACACCUaAGCUAUAUacaaaugaguauauaGCUUAg- -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUA---------------CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 45081 0.67 0.999898
Target:  5'- uUUUAACACCUaAGCUAuauacuuacuugcUAUGCUUGUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU-------------AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 46938 0.73 0.98827
Target:  5'- gUUAAUACCUaAGCUAUAUGCaagCAUa -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUACGa--GUAc -5'
28258 3' -45.6 NC_005902.1 + 47186 0.66 0.999984
Target:  5'- cUUUAACACUUaAGCUAUAUaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 50046 0.73 0.984754
Target:  5'- cUUUAACACCUaAGCUAuguucauuugcUAUGCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU-----------AUACGAGUac -5'
28258 3' -45.6 NC_005902.1 + 50115 0.66 0.999989
Target:  5'- -cUAACACCUaAGCUAcauacuuacUGUGCUUGUu -3'
miRNA:   3'- aaAUUGUGGAcUCGAU---------AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 50213 0.71 0.997103
Target:  5'- cUUUAACACCUaAGCUAUAUauaGCUUAg- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUA---CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 51676 0.69 0.999528
Target:  5'- uUUUAACACUUaAGCUAUauacucauuugcuGUGCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUA-------------UACGAGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.