miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 3' -45.6 NC_005902.1 + 169514 0.81 0.732363
Target:  5'- cUUUAACACCUGAGCUAUAUauCUCAg- -3'
miRNA:   3'- -AAAUUGUGGACUCGAUAUAc-GAGUac -5'
28258 3' -45.6 NC_005902.1 + 142157 0.69 0.999539
Target:  5'- cUUUAACACCUaAGCUAUAUaCUUAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 112177 0.68 0.999715
Target:  5'- --gAGCACagUGAGUgagUAUAUGCUUAUGu -3'
miRNA:   3'- aaaUUGUGg-ACUCG---AUAUACGAGUAC- -5'
28258 3' -45.6 NC_005902.1 + 42241 0.66 0.99999
Target:  5'- cUUAACACCUaAGCUAUAUacaaaugaguauauaGCUUAg- -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUA---------------CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 146429 0.74 0.978047
Target:  5'- cUUUAACACCUaAGCUAuaauucacUAUGCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU--------AUACGAGUac -5'
28258 3' -45.6 NC_005902.1 + 99559 0.73 0.980488
Target:  5'- cUUUAACACCUaAGCUAUAUaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 46938 0.73 0.98827
Target:  5'- gUUAAUACCUaAGCUAUAUGCaagCAUa -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUACGa--GUAc -5'
28258 3' -45.6 NC_005902.1 + 41984 0.72 0.991122
Target:  5'- gUUUAACACCUaAGCUAUAUaCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5'
28258 3' -45.6 NC_005902.1 + 170591 0.72 0.993397
Target:  5'- -gUAACACCUGAcCUAUAuaUGCUUAUu -3'
miRNA:   3'- aaAUUGUGGACUcGAUAU--ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 149202 0.69 0.99889
Target:  5'- uUUUAAUACCUaAGCUAUAUaCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 50213 0.71 0.997103
Target:  5'- cUUUAACACCUaAGCUAUAUauaGCUUAg- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAUA---CGAGUac -5'
28258 3' -45.6 NC_005902.1 + 86026 0.72 0.993296
Target:  5'- aUUAACACCUaAGCUAuauuauaUAUGUUCAUa -3'
miRNA:   3'- aAAUUGUGGAcUCGAU-------AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 54343 0.78 0.882769
Target:  5'- aUUAACACCUaAGCUAuauaUAUGCUCAUu -3'
miRNA:   3'- aAAUUGUGGAcUCGAU----AUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 157852 0.7 0.998639
Target:  5'- aUUUAACACCUaAGCUAUAuauuUGCUUg-- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU----ACGAGuac -5'
28258 3' -45.6 NC_005902.1 + 143645 0.76 0.945249
Target:  5'- aUUGACACCUaAGCUAUauacuuaacGUGCUCAUu -3'
miRNA:   3'- aAAUUGUGGAcUCGAUA---------UACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 69071 0.72 0.992327
Target:  5'- gUUAACACCUaAGCUuaAUAUGCUUGUu -3'
miRNA:   3'- aAAUUGUGGAcUCGA--UAUACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 85057 0.7 0.998639
Target:  5'- uUUUAACAUCUaGGCUAUAuacuuacaUGCUCAUu -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU--------ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 184592 0.68 0.999708
Target:  5'- cUUUAACACUUaAGCUAUAuacucacuugcuaUGCUCAUc -3'
miRNA:   3'- -AAAUUGUGGAcUCGAUAU-------------ACGAGUAc -5'
28258 3' -45.6 NC_005902.1 + 88298 0.75 0.966011
Target:  5'- aUUAACACCUaAGCUAUAUGCa---- -3'
miRNA:   3'- aAAUUGUGGAcUCGAUAUACGaguac -5'
28258 3' -45.6 NC_005902.1 + 50046 0.73 0.984754
Target:  5'- cUUUAACACCUaAGCUAuguucauuugcUAUGCUCAc- -3'
miRNA:   3'- -AAAUUGUGGAcUCGAU-----------AUACGAGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.