miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 5' -41.1 NC_005902.1 + 164868 0.66 1
Target:  5'- -cUAUUCAUAUAUAGcUUAaGUGUUAa -3'
miRNA:   3'- aaGUAAGUAUAUAUCaAGUcCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 29130 0.66 1
Target:  5'- cUCAU--AUAUAUAGUUUAGGUaUUAa -3'
miRNA:   3'- aAGUAagUAUAUAUCAAGUCCAcAAU- -5'
28258 5' -41.1 NC_005902.1 + 184626 0.66 1
Target:  5'- cUCA-UCGUAUAUAGcUUAGGgGUUAa -3'
miRNA:   3'- aAGUaAGUAUAUAUCaAGUCCaCAAU- -5'
28258 5' -41.1 NC_005902.1 + 65785 0.66 1
Target:  5'- -aCAgcagCAUgagcAUAUAGcUCAGGUGUUAa -3'
miRNA:   3'- aaGUaa--GUA----UAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 95431 0.66 1
Target:  5'- --aGUUCAUAUAcAGcUUAGGUGUUu -3'
miRNA:   3'- aagUAAGUAUAUaUCaAGUCCACAAu -5'
28258 5' -41.1 NC_005902.1 + 34755 0.66 1
Target:  5'- -----aUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 50227 0.66 1
Target:  5'- -----cUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 5685 0.66 1
Target:  5'- cUUAUUUGUAUAUAGcUUAGGgGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCaCAAU- -5'
28258 5' -41.1 NC_005902.1 + 74811 0.66 1
Target:  5'- -----gUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 80773 0.66 1
Target:  5'- --aGUggGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aagUAagUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 8449 0.66 1
Target:  5'- aUCAa--AUA-AUAGUUUAGGUGUUAa -3'
miRNA:   3'- aAGUaagUAUaUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 135829 0.66 1
Target:  5'- -----cUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 73954 0.66 1
Target:  5'- aUUCAccacacuuuUUUAUAUAUGaUUUAGGUGUUAa -3'
miRNA:   3'- -AAGU---------AAGUAUAUAUcAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 182965 0.66 1
Target:  5'- -----gUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 142510 0.66 1
Target:  5'- cUCAUUUGUAUAUAGgUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 184835 0.66 1
Target:  5'- cUUAUUUGUAUAUAacUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUcaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 131701 0.66 1
Target:  5'- -----aUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 135924 0.67 1
Target:  5'- -aCAguaaGUAUGUAGcUUAGGUGUUAg -3'
miRNA:   3'- aaGUaag-UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 117904 0.67 1
Target:  5'- aUCAUUgAUGUAaAGUUaaaGGGUGUUu -3'
miRNA:   3'- aAGUAAgUAUAUaUCAAg--UCCACAAu -5'
28258 5' -41.1 NC_005902.1 + 11065 0.67 1
Target:  5'- aUCAUUUGUAUAUAGcUUAaGUGUUAg -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUcCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.