miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 5' -41.1 NC_005902.1 + 120282 1.06 0.12106
Target:  5'- gUUCAUUCAUAUAUAGUUCAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 88859 0.9 0.642544
Target:  5'- cUCAUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 11443 0.89 0.688598
Target:  5'- cUCAUUCGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 177621 0.88 0.755613
Target:  5'- cUCAUUUGUAUAUAGUUUAGGUGUa- -3'
miRNA:   3'- aAGUAAGUAUAUAUCAAGUCCACAau -5'
28258 5' -41.1 NC_005902.1 + 15334 0.85 0.854825
Target:  5'- aUUAUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 20146 0.85 0.880063
Target:  5'- aUUUAUUCGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 38445 0.84 0.895492
Target:  5'- cUCAUUUAUAUAUAGcUUAGGUGUUAc -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 156822 0.82 0.940081
Target:  5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 3472 0.82 0.940081
Target:  5'- cUCAUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 5415 0.82 0.940081
Target:  5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 3102 0.82 0.940081
Target:  5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 143797 0.82 0.940081
Target:  5'- cUCAUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 157058 0.82 0.945235
Target:  5'- aUUCGUUUGUGUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 45115 0.81 0.966607
Target:  5'- cUUGUUCGUAUAUAGcUUAGGUGUUAu -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 131983 0.81 0.973221
Target:  5'- aUCuGUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAG-UAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 170612 0.8 0.983518
Target:  5'- cUUAUUUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 169570 0.8 0.983518
Target:  5'- -aCAUgcgaGUGUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaGUAag--UAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 151324 0.79 0.987375
Target:  5'- cUC-UUCAUAUAUAGUaUAGGUGUUAa -3'
miRNA:   3'- aAGuAAGUAUAUAUCAaGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 184773 0.79 0.987375
Target:  5'- cUCAUUUAUAUAUAGccUAGGUGUUGa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaaGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 90629 0.79 0.990495
Target:  5'- aUUGUUCAUAUAUAaUUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUcAAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.