miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 5' -41.1 NC_005902.1 + 1292 0.72 0.999991
Target:  5'- -----gUAUAUAUAGcUCAGGUGUUAg -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 3102 0.82 0.940081
Target:  5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 3472 0.82 0.940081
Target:  5'- cUCAUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 5415 0.82 0.940081
Target:  5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 5685 0.66 1
Target:  5'- cUUAUUUGUAUAUAGcUUAGGgGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCaCAAU- -5'
28258 5' -41.1 NC_005902.1 + 8449 0.66 1
Target:  5'- aUCAa--AUA-AUAGUUUAGGUGUUAa -3'
miRNA:   3'- aAGUaagUAUaUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 11065 0.67 1
Target:  5'- aUCAUUUGUAUAUAGcUUAaGUGUUAg -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUcCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 11443 0.89 0.688598
Target:  5'- cUCAUUCGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 13219 0.76 0.998613
Target:  5'- cUUAcUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUaAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 15334 0.85 0.854825
Target:  5'- aUUAUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 15454 0.74 0.999726
Target:  5'- -----gCAUAUAUAGgUCAGGUGUUAc -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 15498 0.78 0.994909
Target:  5'- -aCAUgugagugUAUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaGUAa------GUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 16530 0.69 1
Target:  5'- ------gAUAUAUAGcUCAGGUGUUAa -3'
miRNA:   3'- aaguaagUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 16910 0.67 1
Target:  5'- aUCAaacaaAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUaag--UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 20146 0.85 0.880063
Target:  5'- aUUUAUUCGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 20316 0.7 0.999999
Target:  5'- cUUAUUUguAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAG--UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 22648 0.75 0.999548
Target:  5'- aUCAUUCAUAUAUAGcUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 26294 0.7 0.999999
Target:  5'- cUCAUUUAUAUAUAGcUUAGGUaUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCAcAAU- -5'
28258 5' -41.1 NC_005902.1 + 28807 0.72 0.999981
Target:  5'- cUCuUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGuAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 29130 0.66 1
Target:  5'- cUCAU--AUAUAUAGUUUAGGUaUUAa -3'
miRNA:   3'- aAGUAagUAUAUAUCAAGUCCAcAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.