miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 5' -41.1 NC_005902.1 + 20146 0.85 0.880063
Target:  5'- aUUUAUUCGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 145969 0.74 0.999646
Target:  5'- cUCAUUCAUAUAUAGcUUAaGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUcCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 48610 0.74 0.999789
Target:  5'- ------aAUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaguaagUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 80773 0.66 1
Target:  5'- --aGUggGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aagUAagUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 156822 0.82 0.940081
Target:  5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 45115 0.81 0.966607
Target:  5'- cUUGUUCGUAUAUAGcUUAGGUGUUAu -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 169570 0.8 0.983518
Target:  5'- -aCAUgcgaGUGUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaGUAag--UAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 90629 0.79 0.990495
Target:  5'- aUUGUUCAUAUAUAaUUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUcAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 113817 0.77 0.995699
Target:  5'- -gUAUgUAUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaGUAaGUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 39301 0.75 0.999548
Target:  5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 13219 0.76 0.998613
Target:  5'- cUUAcUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUaAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 75848 0.78 0.994004
Target:  5'- -cCGUUUGUAUAUAGUUCAGGUaUUAa -3'
miRNA:   3'- aaGUAAGUAUAUAUCAAGUCCAcAAU- -5'
28258 5' -41.1 NC_005902.1 + 3102 0.82 0.940081
Target:  5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 162747 0.76 0.998876
Target:  5'- cUCAUUCAUAUAUAGcUUAGGUaUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCAcAAU- -5'
28258 5' -41.1 NC_005902.1 + 3472 0.82 0.940081
Target:  5'- cUCAUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 52360 0.78 0.994004
Target:  5'- aUUUAUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 29605 0.75 0.999548
Target:  5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 54077 0.74 0.999726
Target:  5'- -aCAg--AUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaGUaagUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 5415 0.82 0.940081
Target:  5'- cUUGUUCAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 170612 0.8 0.983518
Target:  5'- cUUAUUUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.