Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28258 | 5' | -41.1 | NC_005902.1 | + | 131701 | 0.66 | 1 |
Target: 5'- -----aUAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 184835 | 0.66 | 1 |
Target: 5'- cUUAUUUGUAUAUAacUUAGGUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUcaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 142510 | 0.66 | 1 |
Target: 5'- cUCAUUUGUAUAUAGgUUAGaUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 182965 | 0.66 | 1 |
Target: 5'- -----gUAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 73954 | 0.66 | 1 |
Target: 5'- aUUCAccacacuuuUUUAUAUAUGaUUUAGGUGUUAa -3' miRNA: 3'- -AAGU---------AAGUAUAUAUcAAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 135829 | 0.66 | 1 |
Target: 5'- -----cUAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 164868 | 0.66 | 1 |
Target: 5'- -cUAUUCAUAUAUAGcUUAaGUGUUAa -3' miRNA: 3'- aaGUAAGUAUAUAUCaAGUcCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 124415 | 0.67 | 1 |
Target: 5'- aUCAUUUGUAUAUAGcUUAGaUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 179721 | 0.67 | 1 |
Target: 5'- cUCAUUUGUAUAUGGcUUAGGUcUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCAcAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 97740 | 0.67 | 1 |
Target: 5'- aUUUAUUUGcAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- -AAGUAAGUaUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 118676 | 0.68 | 1 |
Target: 5'- cUUAUUUAUAUAUAGUUaGGG-GUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCAAgUCCaCAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 107824 | 0.68 | 1 |
Target: 5'- cUUAUUCGUAUAUAGcUUAGaUGUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 84961 | 0.68 | 1 |
Target: 5'- gUUUGUUCAUAUAUAGUgUAGaUGUUAa -3' miRNA: 3'- -AAGUAAGUAUAUAUCAaGUCcACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 117904 | 0.67 | 1 |
Target: 5'- aUCAUUgAUGUAaAGUUaaaGGGUGUUu -3' miRNA: 3'- aAGUAAgUAUAUaUCAAg--UCCACAAu -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 11065 | 0.67 | 1 |
Target: 5'- aUCAUUUGUAUAUAGcUUAaGUGUUAg -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUcCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 163417 | 0.7 | 0.999999 |
Target: 5'- aUCGUgaguaaAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAag----UAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 20316 | 0.7 | 0.999999 |
Target: 5'- cUUAUUUguAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAAG--UAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 26294 | 0.7 | 0.999999 |
Target: 5'- cUCAUUUAUAUAUAGcUUAGGUaUUAa -3' miRNA: 3'- aAGUAAGUAUAUAUCaAGUCCAcAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 48259 | 0.7 | 0.999999 |
Target: 5'- cUUAUUUguAUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUAAG--UAUAUAUCaAGUCCACAAU- -5' |
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28258 | 5' | -41.1 | NC_005902.1 | + | 167179 | 0.71 | 0.999997 |
Target: 5'- cUUAagCGUAUAUAGcUUAGGUGUUAa -3' miRNA: 3'- aAGUaaGUAUAUAUCaAGUCCACAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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