miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 114321 1.15 0.062015
Target:  5'- cCCUUUAAUUCCACAUCGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 131131 1.09 0.128058
Target:  5'- cCCUUUAAUUCCGCAUUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 95530 0.96 0.497341
Target:  5'- cCCUUUAAcUCCACAUCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 142102 0.89 0.800724
Target:  5'- cCCUUUAAUcCCACAUUGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUAaGGUGUAGCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 63218 0.89 0.800724
Target:  5'- uCCUUUAAUUCUAUAUUGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 76425 0.87 0.872271
Target:  5'- cUCUUUAAUUCCACAgUGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 29525 0.86 0.887749
Target:  5'- uCCUUUAAUUCCACggUGUCAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGuaGCAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 71260 0.86 0.895086
Target:  5'- cCCUUUAAcUCUACAUCGUCAccGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUaaCUAC- -5'
28259 3' -41 NC_005902.1 + 90127 0.86 0.902148
Target:  5'- cCCUUUAAUUCUAUAUCGUCAUcaaUGAc- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUA---ACUac -5'
28259 3' -41 NC_005902.1 + 118244 0.85 0.927579
Target:  5'- --gUUAAUUCUACAUUGUUAUUGAUGa -3'
miRNA:   3'- ggaAAUUAAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 11182 0.85 0.932672
Target:  5'- cCCUUUAAaUCCACAUuguugaugcuuuaUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUA-------------GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 39349 0.83 0.961177
Target:  5'- cCCUUUAAcUCUACAUUGUCAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 110250 0.83 0.96965
Target:  5'- cCCUUUAAUUCCACAUgucauuaacaaugcgUuguGUCAUUGAUGg -3'
miRNA:   3'- -GGAAAUUAAGGUGUA---------------G---CAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 134099 0.82 0.977241
Target:  5'- uUCUUUAAUUUCAUAUUGUCAUUGuUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAACuAC- -5'
28259 3' -41 NC_005902.1 + 104144 0.81 0.982052
Target:  5'- cCUUUUAAcUCCAUGUUGUUAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 169196 0.81 0.984149
Target:  5'- cCUUUUAAcUCUAUGUUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 173198 0.81 0.985503
Target:  5'- uCCUUUAAcUCCACAUCaucaaugacaaagcGUCAUUGAUa -3'
miRNA:   3'- -GGAAAUUaAGGUGUAG--------------CAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 99682 0.81 0.986055
Target:  5'- cUCUUUAAUUCCACAUUGU---UGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAguaACUAC- -5'
28259 3' -41 NC_005902.1 + 110169 0.81 0.988422
Target:  5'- cCCUUUAAUUCCuaagGCAUUGUCAgaauauaaagugucaUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGG----UGUAGCAGU---------------AACUAC- -5'
28259 3' -41 NC_005902.1 + 94765 0.8 0.990732
Target:  5'- cCCUUUAc-UUCACAUUGUUAUUGAUGa -3'
miRNA:   3'- -GGAAAUuaAGGUGUAGCAGUAACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.