miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 1556 0.73 0.999991
Target:  5'- cCCUUUAAcUUCACAUCaUCAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGcAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 5045 0.72 0.999998
Target:  5'- cCCUUUAAcUCCuaaaGCGUUGUCAaUGAUa -3'
miRNA:   3'- -GGAAAUUaAGG----UGUAGCAGUaACUAc -5'
28259 3' -41 NC_005902.1 + 11128 0.68 1
Target:  5'- cCCUUUAAaUCCAUGUUGU---UGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAguaACUAC- -5'
28259 3' -41 NC_005902.1 + 11182 0.85 0.932672
Target:  5'- cCCUUUAAaUCCACAUuguugaugcuuuaUGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUA-------------GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 15803 0.71 1
Target:  5'- uCCUUUAAcUCCuaagGCAUUGUUAaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGG----UGUAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 15930 0.74 0.999971
Target:  5'- uCCUUUAAUUCCugggguauCAUuaauaacacucuacaUGUCGUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGGu-------GUA---------------GCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 16081 0.66 1
Target:  5'- --gUUAAUUCUGCAUUGUUAauaaUGAUGc -3'
miRNA:   3'- ggaAAUUAAGGUGUAGCAGUa---ACUAC- -5'
28259 3' -41 NC_005902.1 + 16114 0.71 0.999999
Target:  5'- cCCUUUAAccccaaaCACGUCGUCggUGAUa -3'
miRNA:   3'- -GGAAAUUaag----GUGUAGCAGuaACUAc -5'
28259 3' -41 NC_005902.1 + 16356 0.67 1
Target:  5'- cCUUUUAAUUCg----UGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGguguaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 17713 0.68 1
Target:  5'- cCUUUUAAcUCCACGUUG-CGaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCaGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 18697 0.69 1
Target:  5'- cCCUUUAAUUCCuaaagCaUCAUUGAUa -3'
miRNA:   3'- -GGAAAUUAAGGugua-GcAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 20126 0.71 1
Target:  5'- cCCUUUAAcUUCACA---UCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGUGUagcAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 20184 0.72 0.999998
Target:  5'- cCCUUUAAcUgCACAUUGUUAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAgGUGUAGCAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 23358 0.69 1
Target:  5'- cCCUUUAAUUCUAUGUUGUUAaUGcaGUGu -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUaAC--UAC- -5'
28259 3' -41 NC_005902.1 + 24052 0.7 1
Target:  5'- cCCUUUAAUUCUacgACAUCaUCAaUGAUa -3'
miRNA:   3'- -GGAAAUUAAGG---UGUAGcAGUaACUAc -5'
28259 3' -41 NC_005902.1 + 28695 0.68 1
Target:  5'- cCCUUUAAcaCCACAUUuuacaaugcuuugaGUCAUaGAUGa -3'
miRNA:   3'- -GGAAAUUaaGGUGUAG--------------CAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 28738 0.71 1
Target:  5'- gCCUUagauuaaggagUAAUUCCuaaaACAUUGUCAaUGAUGu -3'
miRNA:   3'- -GGAA-----------AUUAAGG----UGUAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 29525 0.86 0.887749
Target:  5'- uCCUUUAAUUCCACggUGUCAUcaaUGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGuaGCAGUA---ACUAC- -5'
28259 3' -41 NC_005902.1 + 33156 0.72 0.999997
Target:  5'- aCCUUUAAcUCUAUAUUGUCAUcGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAaCUac -5'
28259 3' -41 NC_005902.1 + 36166 0.73 0.999988
Target:  5'- cUCUUUAAcUCUACAUUGUCAUcaacGAUGu -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUAa---CUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.