miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 114356 1.05 0.060212
Target:  5'- cAUCAUCAAUGACGUGUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUGCACAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 69276 0.87 0.507914
Target:  5'- uGUCGUCAAUGAUGUuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCAcAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 20257 0.86 0.595307
Target:  5'- uAUCAUCAAUGAUGUuUUAGGAGUUAu -3'
miRNA:   3'- -UAGUAGUUACUGCAcAAUCCUCAAUu -5'
28259 5' -44.7 NC_005902.1 + 169231 0.83 0.72842
Target:  5'- uGUCAUCAAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 37354 0.82 0.749757
Target:  5'- cGUCAUCGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 174969 0.82 0.760246
Target:  5'- uAUCAUCAAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 159829 0.82 0.79085
Target:  5'- cAUCGUCAAUGAUGccUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 90507 0.8 0.847142
Target:  5'- cAUCAUCGAUGACGaUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-ACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 149173 0.78 0.915432
Target:  5'- cAUCAUCGAUGACauuUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 20090 0.78 0.927579
Target:  5'- uGUCAUCGAUGACaugaGUUAGGAGUa-- -3'
miRNA:   3'- -UAGUAGUUACUGca--CAAUCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 139848 0.78 0.927579
Target:  5'- cAUCAUUGAUGACGccaugaGUUAGGGGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCa-----CAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 20200 0.77 0.938582
Target:  5'- uGUUAUCAAUGAUGccUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 90143 0.77 0.942164
Target:  5'- cGUCAUCAAUGACacaaaGUGUuguugauaaugccuUAGGAGUUAGa -3'
miRNA:   3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 165816 0.77 0.94845
Target:  5'- cAUUAUCAAUGAUGccUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 104298 0.76 0.957205
Target:  5'- cAUCAUUGAUGACgGUGUgaggugGGGGGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-CACAa-----UCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 48201 0.76 0.961177
Target:  5'- uAUCAUCGAUGACGccUUAGGAGcUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCaAUU- -5'
28259 5' -44.7 NC_005902.1 + 71295 0.76 0.964886
Target:  5'- uAUUAUCAAUGAUGccUUGGGAGUUAGg -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 159714 0.76 0.968339
Target:  5'- cGUCAUUGAUGAUGccUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 42329 0.76 0.968339
Target:  5'- cAUCAUCAAUGACuGUgaaGUUGGGGGUa-- -3'
miRNA:   3'- -UAGUAGUUACUG-CA---CAAUCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 24068 0.75 0.973643
Target:  5'- cAUCAUCAAUGAUacuauGUGUuauuaacgaugccuUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.