miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 37354 0.82 0.749757
Target:  5'- cGUCAUCGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 163580 0.7 0.999474
Target:  5'- uAUCAUUGAUGACacaaaGUGUuauuaaugacacuuUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 149286 0.68 0.99992
Target:  5'- cAUCAUCGAUGAUGccUUAGGAuUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5'
28259 5' -44.7 NC_005902.1 + 33172 0.66 0.999997
Target:  5'- uGUCAUCGAcGAUacuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUaCUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 139848 0.78 0.927579
Target:  5'- cAUCAUUGAUGACGccaugaGUUAGGGGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCa-----CAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 20200 0.77 0.938582
Target:  5'- uGUUAUCAAUGAUGccUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 48201 0.76 0.961177
Target:  5'- uAUCAUCGAUGACGccUUAGGAGcUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCaAUU- -5'
28259 5' -44.7 NC_005902.1 + 142118 0.74 0.990732
Target:  5'- uGUCAUCGAUGAUGcuUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCuCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 169921 0.72 0.995707
Target:  5'- uAUCAcCGAcGACGUGUUuGGGGUUAAa -3'
miRNA:   3'- -UAGUaGUUaCUGCACAAuCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 27634 0.71 0.999045
Target:  5'- cAUCggCGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 114776 0.72 0.997451
Target:  5'- uGUCAUCGGUGACGaUGUa--GAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-ACAaucCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 172698 0.73 0.993092
Target:  5'- uGUUGUCAAUGAUGccUUAGGGGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 90507 0.8 0.847142
Target:  5'- cAUCAUCGAUGACGaUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-ACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 143563 0.72 0.99788
Target:  5'- cAUUGUCAAUGACaucUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 149173 0.78 0.915432
Target:  5'- cAUCAUCGAUGACauuUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 91085 0.74 0.990732
Target:  5'- cAUUAUUGAUGAUGUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 137633 0.71 0.99856
Target:  5'- -aCAUCAAUGAUacuUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 50430 0.69 0.999893
Target:  5'- cAUCAUCGAUGACauauuuGGAGUUAu -3'
miRNA:   3'- -UAGUAGUUACUGcacaauCCUCAAUu -5'
28259 5' -44.7 NC_005902.1 + 20090 0.78 0.927579
Target:  5'- uGUCAUCGAUGACaugaGUUAGGAGUa-- -3'
miRNA:   3'- -UAGUAGUUACUGca--CAAUCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 104298 0.76 0.957205
Target:  5'- cAUCAUUGAUGACgGUGUgaggugGGGGGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUG-CACAa-----UCCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.