miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 8264 0.68 0.999955
Target:  5'- cAUCAUUggUG-CGUG--AGGGGUUAAa -3'
miRNA:   3'- -UAGUAGuuACuGCACaaUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 81755 0.68 0.999955
Target:  5'- cGUCAUCAAUGAUGccUUAaGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUcCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 177692 0.68 0.99994
Target:  5'- uGUCAUCGAcaAUGUuUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUacUGCAcAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 142446 0.68 0.99994
Target:  5'- uGUUAUCGAUGACauuUUAGGAGUUu- -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAuu -5'
28259 5' -44.7 NC_005902.1 + 135623 0.68 0.99994
Target:  5'- uGUCAUCGAUGAUGccUUAGGAaUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5'
28259 5' -44.7 NC_005902.1 + 170216 0.68 0.999928
Target:  5'- cAUUAUCAAUGAUGgggcaucauuaacaaUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC---------------AC--AAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 149286 0.68 0.99992
Target:  5'- cAUCAUCGAUGAUGccUUAGGAuUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5'
28259 5' -44.7 NC_005902.1 + 94967 0.69 0.999893
Target:  5'- cAUCAUCAAUaAUGccUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 50430 0.69 0.999893
Target:  5'- cAUCAUCGAUGACauauuuGGAGUUAu -3'
miRNA:   3'- -UAGUAGUUACUGcacaauCCUCAAUu -5'
28259 5' -44.7 NC_005902.1 + 72300 0.69 0.999763
Target:  5'- uAUUGUUAAUGAUGcUGcuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-AC--AAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 28119 0.7 0.999612
Target:  5'- cAUCAUCGAUGACacau--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGcacaauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 163580 0.7 0.999474
Target:  5'- uAUCAUUGAUGACacaaaGUGUuauuaaugacacuuUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 158306 0.71 0.999045
Target:  5'- cAUCggCGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 136052 0.71 0.999045
Target:  5'- cAUUAUUGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 27634 0.71 0.999045
Target:  5'- cAUCggCGAUGAUGccUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 24261 0.71 0.999045
Target:  5'- uAUCAUCAAUGACaccUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCuCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 131043 0.71 0.99856
Target:  5'- uGUUAUUAAUGAUGccUUAGGGGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 137633 0.71 0.99856
Target:  5'- -aCAUCAAUGAUacuUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 23384 0.71 0.998248
Target:  5'- uGUCAUUAAUGAUGUGUUcaauguuaaAGG-GUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCACAA---------UCCuCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 143563 0.72 0.99788
Target:  5'- cAUUGUCAAUGACaucUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcacAAUCCUCAAUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.