Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28259 | 5' | -44.7 | NC_005902.1 | + | 8264 | 0.68 | 0.999955 |
Target: 5'- cAUCAUUggUG-CGUG--AGGGGUUAAa -3' miRNA: 3'- -UAGUAGuuACuGCACaaUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 81755 | 0.68 | 0.999955 |
Target: 5'- cGUCAUCAAUGAUGccUUAaGAGUUAAc -3' miRNA: 3'- -UAGUAGUUACUGCacAAUcCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 177692 | 0.68 | 0.99994 |
Target: 5'- uGUCAUCGAcaAUGUuUUAGGAGUUAAg -3' miRNA: 3'- -UAGUAGUUacUGCAcAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 142446 | 0.68 | 0.99994 |
Target: 5'- uGUUAUCGAUGACauuUUAGGAGUUu- -3' miRNA: 3'- -UAGUAGUUACUGcacAAUCCUCAAuu -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 135623 | 0.68 | 0.99994 |
Target: 5'- uGUCAUCGAUGAUGccUUAGGAaUUAAc -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 170216 | 0.68 | 0.999928 |
Target: 5'- cAUUAUCAAUGAUGgggcaucauuaacaaUGccUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGC---------------AC--AAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 149286 | 0.68 | 0.99992 |
Target: 5'- cAUCAUCGAUGAUGccUUAGGAuUUAAa -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCUcAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 94967 | 0.69 | 0.999893 |
Target: 5'- cAUCAUCAAUaAUGccUUAGGAGUUAAg -3' miRNA: 3'- -UAGUAGUUAcUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 50430 | 0.69 | 0.999893 |
Target: 5'- cAUCAUCGAUGACauauuuGGAGUUAu -3' miRNA: 3'- -UAGUAGUUACUGcacaauCCUCAAUu -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 72300 | 0.69 | 0.999763 |
Target: 5'- uAUUGUUAAUGAUGcUGcuUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGC-AC--AAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 28119 | 0.7 | 0.999612 |
Target: 5'- cAUCAUCGAUGACacau--GGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGcacaauCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 163580 | 0.7 | 0.999474 |
Target: 5'- uAUCAUUGAUGACacaaaGUGUuauuaaugacacuuUAGGAGUUAAg -3' miRNA: 3'- -UAGUAGUUACUG-----CACA--------------AUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 158306 | 0.71 | 0.999045 |
Target: 5'- cAUCggCGAUGAUGccUUAGGAGUUAAa -3' miRNA: 3'- -UAGuaGUUACUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 136052 | 0.71 | 0.999045 |
Target: 5'- cAUUAUUGAUGAUGccUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 27634 | 0.71 | 0.999045 |
Target: 5'- cAUCggCGAUGAUGccUUAGGAGUUAAa -3' miRNA: 3'- -UAGuaGUUACUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 24261 | 0.71 | 0.999045 |
Target: 5'- uAUCAUCAAUGACaccUUAGGuGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGcacAAUCCuCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 131043 | 0.71 | 0.99856 |
Target: 5'- uGUUAUUAAUGAUGccUUAGGGGUUAAa -3' miRNA: 3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 137633 | 0.71 | 0.99856 |
Target: 5'- -aCAUCAAUGAUacuUUAGGAGUUAAa -3' miRNA: 3'- uaGUAGUUACUGcacAAUCCUCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 23384 | 0.71 | 0.998248 |
Target: 5'- uGUCAUUAAUGAUGUGUUcaauguuaaAGG-GUUAAc -3' miRNA: 3'- -UAGUAGUUACUGCACAA---------UCCuCAAUU- -5' |
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28259 | 5' | -44.7 | NC_005902.1 | + | 143563 | 0.72 | 0.99788 |
Target: 5'- cAUUGUCAAUGACaucUUAGGAGUUAAc -3' miRNA: 3'- -UAGUAGUUACUGcacAAUCCUCAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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