miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2826 3' -62.9 NC_001491.2 + 115456 0.66 0.643787
Target:  5'- cGGcccGGGACgg-CGcGCGCUucggggaGCUGGCGGc -3'
miRNA:   3'- -CCc--CCCUGagaGC-CGCGA-------CGACCGCC- -5'
2826 3' -62.9 NC_001491.2 + 118920 0.66 0.635063
Target:  5'- cGGGcGGCUucugcCUCGGCGgaGCUcGGCGcGg -3'
miRNA:   3'- cCCCcCUGA-----GAGCCGCgaCGA-CCGC-C- -5'
2826 3' -62.9 NC_001491.2 + 82920 0.66 0.615678
Target:  5'- cGGuuGGGGCa--CGG-GCUGCUGGUGGa -3'
miRNA:   3'- cCC--CCCUGagaGCCgCGACGACCGCC- -5'
2826 3' -62.9 NC_001491.2 + 117316 0.67 0.586699
Target:  5'- -cGGGGACUCgcgggaCGG-GCUGUgGGCGa -3'
miRNA:   3'- ccCCCCUGAGa-----GCCgCGACGaCCGCc -5'
2826 3' -62.9 NC_001491.2 + 69625 0.67 0.567518
Target:  5'- aGGGGGGcaugcgacaGCUacaugaCUCGuGCagGUUGCUGGCGa -3'
miRNA:   3'- -CCCCCC---------UGA------GAGC-CG--CGACGACCGCc -5'
2826 3' -62.9 NC_001491.2 + 122242 0.68 0.501925
Target:  5'- uGGGGGGuuggcGCUUgCGGCGCUuuuuggcagcGCUaGcGCGGg -3'
miRNA:   3'- -CCCCCC-----UGAGaGCCGCGA----------CGA-C-CGCC- -5'
2826 3' -62.9 NC_001491.2 + 96354 0.68 0.474822
Target:  5'- --cGGGACUCUCcagGGcCGCUGgaGGCGc -3'
miRNA:   3'- cccCCCUGAGAG---CC-GCGACgaCCGCc -5'
2826 3' -62.9 NC_001491.2 + 146426 0.69 0.43136
Target:  5'- aGGGcgccGGGGC-CUCGGgcUGUUGCUGGCuGGc -3'
miRNA:   3'- -CCC----CCCUGaGAGCC--GCGACGACCG-CC- -5'
2826 3' -62.9 NC_001491.2 + 140154 0.7 0.406427
Target:  5'- uGGGGGACUUugccgcggUCGuGCGCgccgUGUcGGCGGa -3'
miRNA:   3'- cCCCCCUGAG--------AGC-CGCG----ACGaCCGCC- -5'
2826 3' -62.9 NC_001491.2 + 139971 0.7 0.382418
Target:  5'- uGGGGcGGuACcucguggaUCUCGGCGCgGCgccGGUGGa -3'
miRNA:   3'- -CCCC-CC-UG--------AGAGCCGCGaCGa--CCGCC- -5'
2826 3' -62.9 NC_001491.2 + 115253 1.1 0.000613
Target:  5'- aGGGGGGACUCUCGGCGCUGCUGGCGGc -3'
miRNA:   3'- -CCCCCCUGAGAGCCGCGACGACCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.