miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2826 5' -58 NC_001491.2 + 114913 0.66 0.794349
Target:  5'- cAGCCGCgcgGUCCUCACCuccAGCacccucuucGGgCCCGg -3'
miRNA:   3'- -UUGGCG---UAGGAGUGGu--UCG---------CCaGGGU- -5'
2826 5' -58 NC_001491.2 + 145006 0.66 0.785226
Target:  5'- cGGCCGCGUCCccacCGCCGGGUGaugaggagCCCGu -3'
miRNA:   3'- -UUGGCGUAGGa---GUGGUUCGCca------GGGU- -5'
2826 5' -58 NC_001491.2 + 60747 0.66 0.785226
Target:  5'- ---gGCGUCCUCACCAcaGGgGGUgCUg -3'
miRNA:   3'- uuggCGUAGGAGUGGU--UCgCCAgGGu -5'
2826 5' -58 NC_001491.2 + 138137 0.67 0.72791
Target:  5'- --gCGCcUCCUCGCCGcuggaguuGGCGGcCCCc -3'
miRNA:   3'- uugGCGuAGGAGUGGU--------UCGCCaGGGu -5'
2826 5' -58 NC_001491.2 + 112297 0.68 0.708044
Target:  5'- cACCGUGUgCUCACCcGGgGGuuUCCCGc -3'
miRNA:   3'- uUGGCGUAgGAGUGGuUCgCC--AGGGU- -5'
2826 5' -58 NC_001491.2 + 93524 0.68 0.676769
Target:  5'- cACCGCAUCCaaaGCCAuaguuggaaucauGGCGGUCaucuCCAu -3'
miRNA:   3'- uUGGCGUAGGag-UGGU-------------UCGCCAG----GGU- -5'
2826 5' -58 NC_001491.2 + 116201 0.68 0.65741
Target:  5'- cAGCCcucauCGUCCUCGCCcGGCGGcgagCCCu -3'
miRNA:   3'- -UUGGc----GUAGGAGUGGuUCGCCa---GGGu -5'
2826 5' -58 NC_001491.2 + 56461 0.69 0.647188
Target:  5'- cGCUGcCAUCCccuuggCGCUGAGCGcGUCCCGa -3'
miRNA:   3'- uUGGC-GUAGGa-----GUGGUUCGC-CAGGGU- -5'
2826 5' -58 NC_001491.2 + 116239 0.69 0.616483
Target:  5'- aGGCCGUGUCCcugcuggcccCACCGAcuCGGUCCCAg -3'
miRNA:   3'- -UUGGCGUAGGa---------GUGGUUc-GCCAGGGU- -5'
2826 5' -58 NC_001491.2 + 148168 0.76 0.269447
Target:  5'- aGACCGCGUCCagCACCAggagcuugcgccuGGCGGagCCCAg -3'
miRNA:   3'- -UUGGCGUAGGa-GUGGU-------------UCGCCa-GGGU- -5'
2826 5' -58 NC_001491.2 + 115219 1.06 0.002622
Target:  5'- gAACCGCAUCCUCACCAAGCGGUCCCAc -3'
miRNA:   3'- -UUGGCGUAGGAGUGGUUCGCCAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.