miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28260 3' -39 NC_005902.1 + 3353 0.66 1
Target:  5'- aUCAAuaaaacuaagaaauuAACAGAUGAAG-CUGUAGa-- -3'
miRNA:   3'- aAGUU---------------UUGUUUACUUCaGAUAUCacu -5'
28260 3' -39 NC_005902.1 + 136958 0.66 1
Target:  5'- gUUUAAAACuauAUGu-GUUUAUGGUGAa -3'
miRNA:   3'- -AAGUUUUGuu-UACuuCAGAUAUCACU- -5'
28260 3' -39 NC_005902.1 + 54251 0.68 1
Target:  5'- aUUUAAGACAuAUGAAGUCUAc----- -3'
miRNA:   3'- -AAGUUUUGUuUACUUCAGAUaucacu -5'
28260 3' -39 NC_005902.1 + 58454 0.7 1
Target:  5'- aUUCAAAAUGAAUGAAGUCga---UGAu -3'
miRNA:   3'- -AAGUUUUGUUUACUUCAGauaucACU- -5'
28260 3' -39 NC_005902.1 + 95663 0.71 1
Target:  5'- -aCAu--CGAAUGAAGUCUAUAGc-- -3'
miRNA:   3'- aaGUuuuGUUUACUUCAGAUAUCacu -5'
28260 3' -39 NC_005902.1 + 181311 0.71 1
Target:  5'- --aGAAAUAAAUgGAAGUCUGUGGcGAc -3'
miRNA:   3'- aagUUUUGUUUA-CUUCAGAUAUCaCU- -5'
28260 3' -39 NC_005902.1 + 30876 0.71 1
Target:  5'- aUUUAAAAUGAAUgGAAGUCUAUGaUGAu -3'
miRNA:   3'- -AAGUUUUGUUUA-CUUCAGAUAUcACU- -5'
28260 3' -39 NC_005902.1 + 85197 0.72 1
Target:  5'- --aAAAAgAAGUacuaGAAGUCUAUGGUGAc -3'
miRNA:   3'- aagUUUUgUUUA----CUUCAGAUAUCACU- -5'
28260 3' -39 NC_005902.1 + 74694 0.72 1
Target:  5'- --aGAAAUGGAUGAAGUCUAUA-UGAc -3'
miRNA:   3'- aagUUUUGUUUACUUCAGAUAUcACU- -5'
28260 3' -39 NC_005902.1 + 155111 0.72 1
Target:  5'- gUUAAAGCAauauuuuauuuugAAUGAAGUCUAUGaUGAu -3'
miRNA:   3'- aAGUUUUGU-------------UUACUUCAGAUAUcACU- -5'
28260 3' -39 NC_005902.1 + 92448 0.68 1
Target:  5'- aUUUAAAAUGAAcGAAGUCUAUGGc-- -3'
miRNA:   3'- -AAGUUUUGUUUaCUUCAGAUAUCacu -5'
28260 3' -39 NC_005902.1 + 4690 0.68 1
Target:  5'- aUUUAAGAUAAAUgGAAGUCUAUAa--- -3'
miRNA:   3'- -AAGUUUUGUUUA-CUUCAGAUAUcacu -5'
28260 3' -39 NC_005902.1 + 90337 0.66 1
Target:  5'- aUUCGAGACAAauauGUGuAAGUCUAUAc--- -3'
miRNA:   3'- -AAGUUUUGUU----UAC-UUCAGAUAUcacu -5'
28260 3' -39 NC_005902.1 + 127550 0.74 0.999999
Target:  5'- --aGAAAUAAAUGAAGUUUAU-GUGAc -3'
miRNA:   3'- aagUUUUGUUUACUUCAGAUAuCACU- -5'
28260 3' -39 NC_005902.1 + 3522 0.75 0.99999
Target:  5'- aUUUAAAAUGAAUaGAAGUCUAUAG-GAa -3'
miRNA:   3'- -AAGUUUUGUUUA-CUUCAGAUAUCaCU- -5'
28260 3' -39 NC_005902.1 + 105066 0.82 0.99259
Target:  5'- -gUAAGAUAAAUGAAGUCUAU-GUGAc -3'
miRNA:   3'- aaGUUUUGUUUACUUCAGAUAuCACU- -5'
28260 3' -39 NC_005902.1 + 147672 0.86 0.957044
Target:  5'- aUUUAAAAUAAAUGAAGUCUAU-GUGAc -3'
miRNA:   3'- -AAGUUUUGUUUACUUCAGAUAuCACU- -5'
28260 3' -39 NC_005902.1 + 79427 1.02 0.356837
Target:  5'- aUUCGGGAUAAAUGAAGUCUAUAGUGAc -3'
miRNA:   3'- -AAGUUUUGUUUACUUCAGAUAUCACU- -5'
28260 3' -39 NC_005902.1 + 106572 1.1 0.14369
Target:  5'- aUUCAAAACAAAUGAAGUCUAUAGUGAa -3'
miRNA:   3'- -AAGUUUUGUUUACUUCAGAUAUCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.