Results 1 - 19 of 19 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28260 | 3' | -39 | NC_005902.1 | + | 90337 | 0.66 | 1 |
Target: 5'- aUUCGAGACAAauauGUGuAAGUCUAUAc--- -3' miRNA: 3'- -AAGUUUUGUU----UAC-UUCAGAUAUcacu -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 54251 | 0.68 | 1 |
Target: 5'- aUUUAAGACAuAUGAAGUCUAc----- -3' miRNA: 3'- -AAGUUUUGUuUACUUCAGAUaucacu -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 58454 | 0.7 | 1 |
Target: 5'- aUUCAAAAUGAAUGAAGUCga---UGAu -3' miRNA: 3'- -AAGUUUUGUUUACUUCAGauaucACU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 95663 | 0.71 | 1 |
Target: 5'- -aCAu--CGAAUGAAGUCUAUAGc-- -3' miRNA: 3'- aaGUuuuGUUUACUUCAGAUAUCacu -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 181311 | 0.71 | 1 |
Target: 5'- --aGAAAUAAAUgGAAGUCUGUGGcGAc -3' miRNA: 3'- aagUUUUGUUUA-CUUCAGAUAUCaCU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 30876 | 0.71 | 1 |
Target: 5'- aUUUAAAAUGAAUgGAAGUCUAUGaUGAu -3' miRNA: 3'- -AAGUUUUGUUUA-CUUCAGAUAUcACU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 85197 | 0.72 | 1 |
Target: 5'- --aAAAAgAAGUacuaGAAGUCUAUGGUGAc -3' miRNA: 3'- aagUUUUgUUUA----CUUCAGAUAUCACU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 74694 | 0.72 | 1 |
Target: 5'- --aGAAAUGGAUGAAGUCUAUA-UGAc -3' miRNA: 3'- aagUUUUGUUUACUUCAGAUAUcACU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 136958 | 0.66 | 1 |
Target: 5'- gUUUAAAACuauAUGu-GUUUAUGGUGAa -3' miRNA: 3'- -AAGUUUUGuu-UACuuCAGAUAUCACU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 155111 | 0.72 | 1 |
Target: 5'- gUUAAAGCAauauuuuauuuugAAUGAAGUCUAUGaUGAu -3' miRNA: 3'- aAGUUUUGU-------------UUACUUCAGAUAUcACU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 3353 | 0.66 | 1 |
Target: 5'- aUCAAuaaaacuaagaaauuAACAGAUGAAG-CUGUAGa-- -3' miRNA: 3'- aAGUU---------------UUGUUUACUUCaGAUAUCacu -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 4690 | 0.68 | 1 |
Target: 5'- aUUUAAGAUAAAUgGAAGUCUAUAa--- -3' miRNA: 3'- -AAGUUUUGUUUA-CUUCAGAUAUcacu -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 92448 | 0.68 | 1 |
Target: 5'- aUUUAAAAUGAAcGAAGUCUAUGGc-- -3' miRNA: 3'- -AAGUUUUGUUUaCUUCAGAUAUCacu -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 127550 | 0.74 | 0.999999 |
Target: 5'- --aGAAAUAAAUGAAGUUUAU-GUGAc -3' miRNA: 3'- aagUUUUGUUUACUUCAGAUAuCACU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 3522 | 0.75 | 0.99999 |
Target: 5'- aUUUAAAAUGAAUaGAAGUCUAUAG-GAa -3' miRNA: 3'- -AAGUUUUGUUUA-CUUCAGAUAUCaCU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 105066 | 0.82 | 0.99259 |
Target: 5'- -gUAAGAUAAAUGAAGUCUAU-GUGAc -3' miRNA: 3'- aaGUUUUGUUUACUUCAGAUAuCACU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 147672 | 0.86 | 0.957044 |
Target: 5'- aUUUAAAAUAAAUGAAGUCUAU-GUGAc -3' miRNA: 3'- -AAGUUUUGUUUACUUCAGAUAuCACU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 79427 | 1.02 | 0.356837 |
Target: 5'- aUUCGGGAUAAAUGAAGUCUAUAGUGAc -3' miRNA: 3'- -AAGUUUUGUUUACUUCAGAUAUCACU- -5' |
|||||||
28260 | 3' | -39 | NC_005902.1 | + | 106572 | 1.1 | 0.14369 |
Target: 5'- aUUCAAAACAAAUGAAGUCUAUAGUGAa -3' miRNA: 3'- -AAGUUUUGUUUACUUCAGAUAUCACU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home