Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28260 | 5' | -43.5 | NC_005902.1 | + | 175877 | 0.66 | 1 |
Target: 5'- uGGUUAUUAUAGACcgcCAUUUAUUUUa -3' miRNA: 3'- -CCAGUGAUAUCUGaa-GUAAAUAGGGc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 93589 | 0.66 | 1 |
Target: 5'- gGGUUGCcAUAGACUUCGUUcAUUUUa -3' miRNA: 3'- -CCAGUGaUAUCUGAAGUAAaUAGGGc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 147707 | 0.69 | 0.999998 |
Target: 5'- uGGUUACUGUAaACUUcCAUUUAUUUCu -3' miRNA: 3'- -CCAGUGAUAUcUGAA-GUAAAUAGGGc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 131786 | 0.7 | 0.999985 |
Target: 5'- uGG-UugUGUAGACUUCAUaUGUCUUa -3' miRNA: 3'- -CCaGugAUAUCUGAAGUAaAUAGGGc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 111347 | 0.71 | 0.999961 |
Target: 5'- uGGUCA-UAUAGACUUCAUccauuucUUA-CCCa -3' miRNA: 3'- -CCAGUgAUAUCUGAAGUA-------AAUaGGGc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 58491 | 0.71 | 0.999949 |
Target: 5'- uGGUCAC-AUAaACUUCAUUUAUUUCu -3' miRNA: 3'- -CCAGUGaUAUcUGAAGUAAAUAGGGc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 166049 | 0.71 | 0.999881 |
Target: 5'- uGUUGCUAUAGACUuauUCAUUUuaaCCCu -3' miRNA: 3'- cCAGUGAUAUCUGA---AGUAAAua-GGGc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 90378 | 0.72 | 0.999799 |
Target: 5'- uGGUUGCUAUAGACUUCAUUcgAUgUa- -3' miRNA: 3'- -CCAGUGAUAUCUGAAGUAAa-UAgGgc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 103736 | 0.72 | 0.999671 |
Target: 5'- uGGUUACUAUAGACuUUUAUUUAUUg-- -3' miRNA: 3'- -CCAGUGAUAUCUG-AAGUAAAUAGggc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 181347 | 0.72 | 0.999671 |
Target: 5'- aGUCGUUAUAGACUUCcAUUUAUCUUa -3' miRNA: 3'- cCAGUGAUAUCUGAAG-UAAAUAGGGc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 38367 | 0.76 | 0.99203 |
Target: 5'- aGUCAC-AUAGACUUCAUUUAUUUUa -3' miRNA: 3'- cCAGUGaUAUCUGAAGUAAAUAGGGc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 80973 | 0.88 | 0.663312 |
Target: 5'- uGGUCAC-AUAGACUUCAUUUAUCUUa -3' miRNA: 3'- -CCAGUGaUAUCUGAAGUAAAUAGGGc -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 79467 | 0.88 | 0.641418 |
Target: 5'- -uUCACUAUAGACUUCAUUUGUUuuGa -3' miRNA: 3'- ccAGUGAUAUCUGAAGUAAAUAGggC- -5' |
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28260 | 5' | -43.5 | NC_005902.1 | + | 106610 | 1.14 | 0.033712 |
Target: 5'- uGGUCACUAUAGACUUCAUUUAUCCCGa -3' miRNA: 3'- -CCAGUGAUAUCUGAAGUAAAUAGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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