miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28260 5' -43.5 NC_005902.1 + 175877 0.66 1
Target:  5'- uGGUUAUUAUAGACcgcCAUUUAUUUUa -3'
miRNA:   3'- -CCAGUGAUAUCUGaa-GUAAAUAGGGc -5'
28260 5' -43.5 NC_005902.1 + 93589 0.66 1
Target:  5'- gGGUUGCcAUAGACUUCGUUcAUUUUa -3'
miRNA:   3'- -CCAGUGaUAUCUGAAGUAAaUAGGGc -5'
28260 5' -43.5 NC_005902.1 + 147707 0.69 0.999998
Target:  5'- uGGUUACUGUAaACUUcCAUUUAUUUCu -3'
miRNA:   3'- -CCAGUGAUAUcUGAA-GUAAAUAGGGc -5'
28260 5' -43.5 NC_005902.1 + 131786 0.7 0.999985
Target:  5'- uGG-UugUGUAGACUUCAUaUGUCUUa -3'
miRNA:   3'- -CCaGugAUAUCUGAAGUAaAUAGGGc -5'
28260 5' -43.5 NC_005902.1 + 111347 0.71 0.999961
Target:  5'- uGGUCA-UAUAGACUUCAUccauuucUUA-CCCa -3'
miRNA:   3'- -CCAGUgAUAUCUGAAGUA-------AAUaGGGc -5'
28260 5' -43.5 NC_005902.1 + 58491 0.71 0.999949
Target:  5'- uGGUCAC-AUAaACUUCAUUUAUUUCu -3'
miRNA:   3'- -CCAGUGaUAUcUGAAGUAAAUAGGGc -5'
28260 5' -43.5 NC_005902.1 + 166049 0.71 0.999881
Target:  5'- uGUUGCUAUAGACUuauUCAUUUuaaCCCu -3'
miRNA:   3'- cCAGUGAUAUCUGA---AGUAAAua-GGGc -5'
28260 5' -43.5 NC_005902.1 + 90378 0.72 0.999799
Target:  5'- uGGUUGCUAUAGACUUCAUUcgAUgUa- -3'
miRNA:   3'- -CCAGUGAUAUCUGAAGUAAa-UAgGgc -5'
28260 5' -43.5 NC_005902.1 + 103736 0.72 0.999671
Target:  5'- uGGUUACUAUAGACuUUUAUUUAUUg-- -3'
miRNA:   3'- -CCAGUGAUAUCUG-AAGUAAAUAGggc -5'
28260 5' -43.5 NC_005902.1 + 181347 0.72 0.999671
Target:  5'- aGUCGUUAUAGACUUCcAUUUAUCUUa -3'
miRNA:   3'- cCAGUGAUAUCUGAAG-UAAAUAGGGc -5'
28260 5' -43.5 NC_005902.1 + 38367 0.76 0.99203
Target:  5'- aGUCAC-AUAGACUUCAUUUAUUUUa -3'
miRNA:   3'- cCAGUGaUAUCUGAAGUAAAUAGGGc -5'
28260 5' -43.5 NC_005902.1 + 80973 0.88 0.663312
Target:  5'- uGGUCAC-AUAGACUUCAUUUAUCUUa -3'
miRNA:   3'- -CCAGUGaUAUCUGAAGUAAAUAGGGc -5'
28260 5' -43.5 NC_005902.1 + 79467 0.88 0.641418
Target:  5'- -uUCACUAUAGACUUCAUUUGUUuuGa -3'
miRNA:   3'- ccAGUGAUAUCUGAAGUAAAUAGggC- -5'
28260 5' -43.5 NC_005902.1 + 106610 1.14 0.033712
Target:  5'- uGGUCACUAUAGACUUCAUUUAUCCCGa -3'
miRNA:   3'- -CCAGUGAUAUCUGAAGUAAAUAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.