miRNA display CGI


Results 101 - 120 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 167322 0.72 0.999838
Target:  5'- --gUAAUACCUAcAGCUuguuUACCCAUa -3'
miRNA:   3'- gaaAUUGUGGAU-UCGAuau-AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 177327 0.72 0.999728
Target:  5'- cCUUUAACACCUAAGUuuauuUGUAUAUagCAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCG-----AUAUAUGg-GUG- -5'
28261 3' -43 NC_005902.1 + 114813 0.72 0.999652
Target:  5'- cCUUUAACACUUAGGUUAUAUAUg--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 71211 0.72 0.999652
Target:  5'- uUUUAAUGCUUAAGCUAUAUACaCUc- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUG-GGug -5'
28261 3' -43 NC_005902.1 + 169551 0.72 0.999652
Target:  5'- -gUUAAUGCUUAAGCUAUAUACaUGCg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 162718 0.72 0.999652
Target:  5'- aUUUAccuuAUACCUAAGCUAcAUAUUCACu -3'
miRNA:   3'- gAAAU----UGUGGAUUCGAUaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 113786 0.72 0.999789
Target:  5'- cCUUUAACAaCUAAGCUAUAUAUacaaACa -3'
miRNA:   3'- -GAAAUUGUgGAUUCGAUAUAUGgg--UG- -5'
28261 3' -43 NC_005902.1 + 110913 0.72 0.999789
Target:  5'- cCUUUuAUACCUAAGCUAUAUAUg--- -3'
miRNA:   3'- -GAAAuUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 135991 0.73 0.998925
Target:  5'- uUUUAACACCUAAGU---AUAUUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGauaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 98642 0.73 0.999442
Target:  5'- ----cAUACCUAAGCUAUAUACaagugagCACa -3'
miRNA:   3'- gaaauUGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 8175 0.73 0.999442
Target:  5'- --cUAACAUUUAAGCUAUAUACUUg- -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 76657 0.73 0.99913
Target:  5'- cCUUUAACAUCUAAGUUugcUAUGCUUAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAu--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 65754 0.73 0.999558
Target:  5'- cCUUUAACACCUGAaCUAUAUAUgaaugaaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 37201 0.73 0.999301
Target:  5'- uUUUAAUACauauuUAAGCUAUAUAUUCACu -3'
miRNA:   3'- gAAAUUGUGg----AUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 52775 0.73 0.999558
Target:  5'- uUUUAACACCUAAGUUAUAUAa---- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUgggug -5'
28261 3' -43 NC_005902.1 + 178178 0.73 0.999301
Target:  5'- uUUUAACACCUGAuaUA-AUACCUGCa -3'
miRNA:   3'- gAAAUUGUGGAUUcgAUaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 144986 0.73 0.999301
Target:  5'- cCUUUAAUACUaAAGCUAUAUACaugauCACu -3'
miRNA:   3'- -GAAAUUGUGGaUUCGAUAUAUGg----GUG- -5'
28261 3' -43 NC_005902.1 + 39414 0.73 0.998925
Target:  5'- ---gAAUACCUAAGCUAUAUACg--- -3'
miRNA:   3'- gaaaUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 157182 0.73 0.999301
Target:  5'- -aUUAAUACCUAAGUUAUAUACa--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 24958 0.73 0.999558
Target:  5'- uCUUUAAUACCcGAGUcAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGaUUCGaUAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.