miRNA display CGI


Results 121 - 140 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 177828 0.73 0.999558
Target:  5'- -aUUAACuuuGCCUAAGCUAUAUACaagugaGCa -3'
miRNA:   3'- gaAAUUG---UGGAUUCGAUAUAUGgg----UG- -5'
28261 3' -43 NC_005902.1 + 65754 0.73 0.999558
Target:  5'- cCUUUAACACCUGAaCUAUAUAUgaaugaaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 24958 0.73 0.999558
Target:  5'- uCUUUAAUACCcGAGUcAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGaUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 98642 0.73 0.999442
Target:  5'- ----cAUACCUAAGCUAUAUACaagugagCACa -3'
miRNA:   3'- gaaauUGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 157081 0.74 0.997641
Target:  5'- -gUUAACACCUAAGCUAUAcAgCauaGCa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUaUgGg--UG- -5'
28261 3' -43 NC_005902.1 + 140055 0.74 0.998388
Target:  5'- aUUUAAUACUUAAGCUAUAUAUuuGu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUg -5'
28261 3' -43 NC_005902.1 + 41025 0.74 0.998045
Target:  5'- uUUUAAUACUUAAGCUAUAUACa--- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 1412 0.74 0.998388
Target:  5'- uUUUAACcCCUAAGCUAUAUACg--- -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 113604 0.74 0.99868
Target:  5'- cCUUUAAUAUCUAAGC-AUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 163512 0.74 0.99868
Target:  5'- -aUUAACAUCUAAGCUAUAaACaaGCg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUaUGggUG- -5'
28261 3' -43 NC_005902.1 + 110189 0.74 0.998045
Target:  5'- cCUUUAAUACCUGAaCUAUAUACaaACg -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 139697 0.74 0.997641
Target:  5'- -gUUAAUACCUAGGCUAUAUAUa--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 151192 0.74 0.998388
Target:  5'- -gUUAACACCUAAGUUAUAUAUa--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 109220 0.74 0.998045
Target:  5'- uUUUAAaggauUAUCUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUU-----GUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 86026 0.74 0.998045
Target:  5'- -aUUAACACCUAAGCUAUAUua-UAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAuggGUG- -5'
28261 3' -43 NC_005902.1 + 100106 0.74 0.998045
Target:  5'- -aUUAACACCUAAGCUAUAUua-UAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAuggGUG- -5'
28261 3' -43 NC_005902.1 + 91311 0.75 0.995271
Target:  5'- uUUUAACACUUAAaCUAUAUACgCACu -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 125545 0.75 0.995271
Target:  5'- -gUUAACAUUUAAGCUAUAUAUaCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 137436 0.75 0.99717
Target:  5'- uUUUAACAUCUAAGCUAUAcACUgAUu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUaUGGgUG- -5'
28261 3' -43 NC_005902.1 + 23222 0.75 0.995994
Target:  5'- --cUAAUAUCUAAGCUAUAUGCaaGCu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.