miRNA display CGI


Results 141 - 160 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 91311 0.75 0.995271
Target:  5'- uUUUAACACUUAAaCUAUAUACgCACu -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 27664 0.75 0.995271
Target:  5'- -aUUAAUACCUAGGCUgcuAUAUACUUAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGA---UAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 125545 0.75 0.995271
Target:  5'- -gUUAACAUUUAAGCUAUAUAUaCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 81173 0.75 0.995994
Target:  5'- cCUUUAAUACCUAccuaAGCUAUAUAUgaGCg -3'
miRNA:   3'- -GAAAUUGUGGAU----UCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 58619 0.75 0.996624
Target:  5'- cCUUUAAgACUUAAGCUGUAUAUaaACa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 108903 0.75 0.995994
Target:  5'- uUUUAACAgCUAGGCUAUAUACaaAUa -3'
miRNA:   3'- gAAAUUGUgGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 23222 0.75 0.995994
Target:  5'- --cUAAUAUCUAAGCUAUAUGCaaGCu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 68285 0.76 0.993505
Target:  5'- uUUUAACuCCUAAGCcAUAUACUUACu -3'
miRNA:   3'- gAAAUUGuGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 174974 0.76 0.994445
Target:  5'- --cUAACACUUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 170535 0.76 0.989907
Target:  5'- uUUUAACACCUAAaCUAUAUauacACUCACa -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUA----UGGGUG- -5'
28261 3' -43 NC_005902.1 + 87126 0.76 0.993505
Target:  5'- -gUUAAUAUUUAAGCUAUAUAUgCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 1263 0.76 0.993505
Target:  5'- uCUUcAACACCUAGGCUAUAUAUaaAUg -3'
miRNA:   3'- -GAAaUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 101130 0.76 0.993505
Target:  5'- cCUUUaAAUAUUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAA-UUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 163390 0.76 0.993505
Target:  5'- uUUUAACAUCUAAGCUAUAUAUgaAUg -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 76205 0.76 0.994445
Target:  5'- uUUUAAUACUUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 117046 0.76 0.989907
Target:  5'- uUUUAAUACUUAAGCUAUAUAUUUAUu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 71658 0.76 0.991247
Target:  5'- cCUUUAACACUUAAGUuaUAUAUGCUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCG--AUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 76873 0.76 0.991247
Target:  5'- uCUUUAAUAUCUAAGCUAUAUAUaaaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgg--UG- -5'
28261 3' -43 NC_005902.1 + 51610 0.76 0.991247
Target:  5'- cCUUUAAUACCUAAGCUGUGaAUaaGCg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUaUGggUG- -5'
28261 3' -43 NC_005902.1 + 162754 0.76 0.991247
Target:  5'- cCUUUAACAUUUAAGCUAUAUGCa--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.